remove netlify references

aspina7 · aspina7 · commit 78a5f01b777a · 2025-11-18T10:18:33.000Z
diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -16,7 +16,7 @@ navbar:
   components:
     home:
       icon: fas fa-home fa-lg
-      href: https://r4epis.netlify.com
+      href: r4epi.github.io/sitrep/
     reference:
       text: Reference
       href: reference/index.html
@@ -25,5 +25,5 @@ navbar:
       href: news/index.html
     github:
       icon: fab fa-github fa-lg
-      href: https://github.com/R4EPI/sitrep
+      href: https://github.com/R4EPI/sitrep/
 
diff --git a/inst/rmarkdown/templates/ajs_outbreak/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/ajs_outbreak/skeleton/skeleton.Rmd
@@ -11,7 +11,7 @@ This is a template which can be used to create an automated outbreak situation
 report for acute jaundice syndrome (AJS). 
 
 - It is organised by time, place and person. 
-For a more detailed explanation of this template, please visit https://r4epis.netlify.com/outbreaks
+For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 - Text within <! > will not show in your final document. These comments are used
 to explain the template. You can delete them if you want.
@@ -36,7 +36,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/ajs_outbreak_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/ajs_outbreak_recode/skeleton/skeleton.Rmd
@@ -13,7 +13,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -37,7 +37,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/cholera_outbreak/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/cholera_outbreak/skeleton/skeleton.Rmd
@@ -11,7 +11,7 @@ This is a template which can be used to create an automated outbreak situation
 report for cholera. 
 
 - It is organised by time, place and person. 
-For a more detailed explanation of this template, please visit https://r4epis.netlify.com/outbreaks
+For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 - Text within <! > will not show in your final document. These comments are used
 to explain the template. You can delete them if you want.
@@ -36,7 +36,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/cholera_outbreak_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/cholera_outbreak_recode/skeleton/skeleton.Rmd
@@ -13,7 +13,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/ 
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -37,7 +37,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/ebs/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/ebs/skeleton/skeleton.Rmd
@@ -22,7 +22,7 @@ surveillance is set up in the project.
 - Comment out the code or delete the output that you don't need when producing your Sitrep or M&E report
 
 
-For a more detailed explanation of this template, please visit https://r4epis.netlify.app/
+For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 - Text within <! > will not show in your final document. These comments are used
 to explain the template. You can delete them if you want.
@@ -47,7 +47,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/measles_outbreak/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/measles_outbreak/skeleton/skeleton.Rmd
@@ -11,7 +11,7 @@ This is a template which can be used to create an automated outbreak situation
 report for measles. 
 
 - It is organised by time, place and person. 
-For a more detailed explanation of this template, please visit https://r4epis.netlify.com/outbreaks
+For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 - Text within <! > will not show in your final document. These comments are used
 to explain the template. You can delete them if you want.
@@ -36,7 +36,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/measles_outbreak_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/measles_outbreak_recode/skeleton/skeleton.Rmd
@@ -13,7 +13,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -37,7 +37,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/meningitis_outbreak/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/meningitis_outbreak/skeleton/skeleton.Rmd
@@ -11,7 +11,7 @@ This is a template which can be used to create an automated outbreak situation
 report for meningitis. 
 
 - It is organised by time, place and person. 
-For a more detailed explanation of this template, please visit https://r4epis.netlify.com/outbreaks
+For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 - Text within <! > will not show in your final document. These comments are used
 to explain the template. You can delete them if you want.
@@ -36,7 +36,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/meningitis_outbreak_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/meningitis_outbreak_recode/skeleton/skeleton.Rmd
@@ -13,7 +13,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/ 
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -37,7 +37,7 @@ field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 
diff --git a/inst/rmarkdown/templates/mortality/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/mortality/skeleton/skeleton.Rmd
@@ -12,7 +12,7 @@ mortality survey.
 
 - There are sections for reading and cleaning data, followed by 
     weighting and observation time calculations and then survey analysis.  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -34,7 +34,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 ```{r setup, include = FALSE, results='hide', message=FALSE, warning=FALSE}
diff --git a/inst/rmarkdown/templates/mortality_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/mortality_recode/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -36,7 +36,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 ```{r setup, include = FALSE, results='hide', message=FALSE, warning=FALSE}
diff --git a/inst/rmarkdown/templates/nutrition/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/nutrition/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ nutrition survey.
 - There are sections for reading and cleaning data, calculating 
     anthropometric indicators based on z-score counts followed by  
     weighting and then survey analysis.  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -71,7 +71,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 ```{r setup, include = FALSE, results='hide', message=FALSE, warning=FALSE}
diff --git a/inst/rmarkdown/templates/nutrition_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/nutrition_recode/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -36,7 +36,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 ```{r setup, include = FALSE, results='hide', message=FALSE, warning=FALSE}
diff --git a/inst/rmarkdown/templates/vaccination_long/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/vaccination_long/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ coverage survey from the long dictionary.
 
 - There are sections for reading and cleaning data, followed by 
     weighting calculations and then survey analysis.  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -37,7 +37,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
   
 
diff --git a/inst/rmarkdown/templates/vaccination_long_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/vaccination_long_recode/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -36,7 +36,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 ```{r setup, include = FALSE, results='hide', message=FALSE, warning=FALSE}
diff --git a/inst/rmarkdown/templates/vaccination_short/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/vaccination_short/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ coverage survey from the short dictionary.
 
 - There are sections for reading and cleaning data, followed by 
     weighting calculations and then survey analysis.  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -37,7 +37,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
   
 
diff --git a/inst/rmarkdown/templates/vaccination_short_recode/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/vaccination_short_recode/skeleton/skeleton.Rmd
@@ -14,7 +14,7 @@ This will produce a word document which can be kept as a log to show how the dat
 was changed. 
 
 - There are sections for reading, reformatting and cleaning data  
-- For a more detailed explanation of this template, please visit https://r4epis.netlify.com/surveys  
+- For a more detailed explanation of this template, please visit https://github.com/R4EPI/sitrep/  
 - Feedback and suggestions are welcome at the [GitHub issues page](https://github.com/R4EPI/sitrep/issues)
 
 - Text within <! > will not show in your final document. These comments are used
@@ -36,7 +36,7 @@ These packages can be quite large and may take a while to download in the
 field. If you have access to a USB key with these packages, it makes sense to
 copy and paste the packages into your computer's R package library 
 (run the command .libPaths() to see the folder path). 
-For help installing packages, please visit https://r4epis.netlify.com/welcome
+For help installing packages, please visit https://github.com/R4EPI/sitrep/
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
 
 ```{r setup, include = FALSE, results='hide', message=FALSE, warning=FALSE}
