RDF Mapping

[ChristophB]

As stated in Onto-Med/top-frontend#335, we want to provide content of the TOP Framework in RDF format to enable better interoperability and as a step to implement the FAIR principles.

• decide, which types of resources to map
• find suitable vocabularies and properties
• create mapping
• decide on a namespace

[ChristophB]

Types of resources

• organisation
• repository
• phenotypes (see https://github.com/Onto-Med/COP)

We will stick to phenotypes for now, leaving out text related concepts.

[ChristophB]

Organisation

TOP property	RDFS equivalent	value
id	dcterms:identifier
name	dcterms:title
description	dcterms:description
createdAt	dcterms:created
updatedAt	dcterms:modified
superOrganisation	dcterms:isPartOf	superOrganisation.id
permission	-
	dcterms:publisher	framework base URL
	foaf:page	URL of organisation, without /api
	rdf:type	http://purl.org/dc/dcmitype/Collection
	rdf:type	foaf:Organisation

Repository

TOP property	RDFS equivalent	value
id	dcterms:identifier
name	dcterms:title
description	dcterms:description
primary	dcterms:accessRights	true=http://publications.europa.eu/resource/authority/access-right/PUBLIC false=http://publications.europa.eu/resource/authority/access-right/RESTRICTED
createdAt	dcterms:created
updatedAt	dcterms:modified
organisation	dcterms:isPartOf	organisation.id
repositoryType	dcterms:type	cop:Phenotype
	dcterms:publisher	framework base URL
	foaf:page	URL of repository, without /api
	rdf:type	http://purl.org/dc/dcmitype/Collection

Phenotype

TOP property	RDFS equivalent	value
id	dcterms:identifier
entityType	rdf:type	single_phenotype=cop:BasicPhenotypeClass composite_phenotype=cop:DerivedPhenotypeClass single_restriction=cop:BasicPhenotypeRestriction composite_restriction=cop:DerivedPhenotypeRestriction
titles	dcterms:title
synonyms	dcterms:alternative
descriptions	dcterms:description
version	pav:version
author	dcterms:creator
createdAt	dcterms:created
codes	skos:closeMatch	code URI
repository	dcterms:isPartOf
equivalentEntities	skos:exactMatch
superCategories	dcterms:isPartOf
subCategories	dcterms:hasPart
superPhenotype	single_restriction=cop:basicRestrictionOf composite_restriction=cop:derivedRestrictionOf
dataType	sd:hasDataType	map to ONTODT or xsd data types?
itemType	cop:hasRepresentationAttribute
restriction
expression	cop:hasRepresentationAttribute	expression.toString()
unit	iao:has measurement unit label	map UCUM to UO concepts?
	dcterms:publisher	framework base URL
	foaf:page	URL of phenotype, without /api
	dcterms:replaces	URL of previous version
	dcterms:isReplacedBy	URL of next version