Problem with the initialisation of a grass session in R

[amelinevallet]

Dear all,
Since I updated GRASS (8.2 -> 8.3.2) and rgrass (?-> 0.4-2), the installation seems broken and I can't start a GRASS session from R anymore. The error message I receive is the following:

Error in read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html,  : 
  Premature end of data in tag guisection line 1 [77]
De plus : Message d'avis :
Dans readLines(outFile) :
  ligne finale incomplète trouvée dans '/tmp/Rtmp9qeL4f/file36b3e2cdcc8ad'
Erreur dans parseGRASS(cmd, legacyExec = legacyExec) : g.region not parsed

Here below an example which I hope is reproducible:

Sys.setenv("GRASS_INSTALLATION"="/usr/lib/grass83")
library(rgrass)
library(unixtools)
set.tempdir("/my_path/temporary_files")

GRASS_INSTALLATION <- Sys.getenv("GRASS_INSTALLATION")
loc <- initGRASS(gisBase=GRASS_INSTALLATION, home=tempdir(), SG=r, override=TRUE, remove_GISRC = TRUE) #return error message
loc2 <- initGRASS() #return error message

I receive the same error message whether I use a custom path for temp files or not, and when I manually indicate within the initGRASS function custom entry parameters.

We are using GRASS 8.3.2 and R version 4.4.0 in a linux environment (Ubuntu 22.04.4 LTS). GRASS works well (I can use all applications from a GRASS session started in the terminal).

print(version)
                      
platform       x86_64-pc-linux-gnu         
arch           x86_64                      
os             linux-gnu                   
system         x86_64, linux-gnu           
status                                     
major          4                           
minor          4.0                         
year           2024                        
month          04                          
day            24                          
svn rev        86474                       
language       R                           
version.string R version 4.4.0 (2024-04-24)
nickname       Puppy Cup 

The environment variables seem all correct:

_R_CHECK_COMPILATION_FLAGS_KNOWN_
                                 -Wformat -Werror=format-security -Wdate-time
BROWSER                          /usr/lib/rstudio-server/bin/postback/rpostback-browser
CLICOLOR_FORCE                   1
DISPLAY                          :0
EDITOR                           vi
GIS_LOCK                         817
GISBASE                          /usr/lib/grass83
GISDBASE                         /home/avallet/grassdata
GISRC                            /home/avallet/.grassrc8
GIT_ASKPASS                      rpostback-askpass
GRASS_ADDON_BASE                 /home/avallet/.grass8/addons
GRASS_INSTALLATION               /usr/lib/grass83
GRASS_MESSAGE_FORMAT             text
GRASS_PAGER                      cat
GRASS_PYTHON                     python3
HOME                             /home/avallet
LANG                             fr_FR.UTF-8
LD_LIBRARY_PATH                  /usr/lib/grass83/lib::/usr/lib/R/lib:/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/lib/server
LN_S                             ln -s
LOCATION_NAME                    file36b3e68712934
LOGNAME                          avallet
MAKE                             make
MAPSET                           file36b3e656a1ed9
MPLENGINE                        tkAgg
PAGER                            /usr/bin/pager
PATH                             /usr/lib/grass83/bin:/usr/lib/grass83/scripts:/home/avallet/.grass8/addons/bin:/home/avallet/.grass8/addons/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/usr/lib/rstudio-server/bin/quarto/bin:/usr/lib/rstudio-server/bin/postback
PYTHONPATH                       /usr/lib/grass83/etc/python
R_BROWSER                        xdg-open
R_BZIPCMD                        /bin/bzip2
R_CLI_HAS_HYPERLINK_IDE_HELP     true
R_CLI_HAS_HYPERLINK_IDE_RUN      true
R_CLI_HAS_HYPERLINK_IDE_VIGNETTE
                                 true
R_DOC_DIR                        /usr/share/R/doc
R_GZIPCMD                        /bin/gzip -n
R_HOME                           /usr/lib/R
R_INCLUDE_DIR                    /usr/share/R/include
R_LIBS_SITE                      /usr/local/lib/R/site-library/:/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
R_LIBS_USER                      /home/avallet/R/x86_64-pc-linux-gnu-library/4.4
R_PAPERSIZE                      letter
R_PAPERSIZE_USER                 letter
R_PDFVIEWER                      /usr/bin/xdg-open
R_PLATFORM                       x86_64-pc-linux-gnu
R_PRINTCMD                       /usr/bin/lpr
R_RD4PDF                         times,inconsolata,hyper
R_SESSION_TMPDIR                 /tmp/Rtmp9qeL4f
R_SHARE_DIR                      /usr/share/R/share
R_STRIP_SHARED_LIB               strip --strip-unneeded
R_STRIP_STATIC_LIB               strip --strip-debug
R_TEXI2DVICMD                    /usr/bin/texi2dvi
R_UNZIPCMD                       /usr/bin/unzip
R_ZIPCMD                         /usr/bin/zip
RMARKDOWN_MATHJAX_PATH           /usr/lib/rstudio-server/resources/mathjax-27
RS_PORT_TOKEN                    1be40ec3f539
RS_RPOSTBACK_PATH                /usr/lib/rstudio-server/bin/rpostback
RS_SERVER_RPC_SOCKET_PATH        /var/run/rstudio-server/rstudio-rserver/session-server-rpc.socket
RS_SERVER_URL                    http://134.158.74.74:8080/
RS_SESSION_TMP_DIR               /var/run/rstudio-server/rstudio-rsession
RS_SESSION_URL                   
RSTUDIO                          1
RSTUDIO_CLI_HYPERLINKS           true
RSTUDIO_CONSOLE_COLOR            256
RSTUDIO_CONSOLE_WIDTH            112
RSTUDIO_HTTP_REFERER             http://134.158.74.74:8080/
RSTUDIO_PANDOC                   /usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64
RSTUDIO_PROGRAM_MODE             server
RSTUDIO_R_MODULE                 
RSTUDIO_R_PRELAUNCH_SCRIPT       
RSTUDIO_R_REPO                   
RSTUDIO_R_VERSION_LABEL          
RSTUDIO_SESSION_PID              224062
RSTUDIO_SESSION_STREAM           avallet-d
RSTUDIO_USER_IDENTITY            avallet
RSTUDIO_USER_IDENTITY_DISPLAY    avallet
SED                              /bin/sed
SSH_ASKPASS                      rpostback-askpass
TAR                              /bin/tar
TERM                             xterm-256color
USER                             avallet

Anyone knows what might be the problem?
Best regards,
Améline

[amelinevallet]

Downgrading rgrass to version 0.3-9 did not solve the issue.

[rsbivand]

@amelinevallet Could you run traceback() after the failing initGRASS() command for both versions of rgrass, reporting back here with the output of sessionInfo() again for both cases?

[amelinevallet]

@rsbivand here is what I obtain with rgrass_0.4-2

> sessionInfo(
R version 4.4.0 (2024-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C               LC_TIME=fr_FR.UTF-8        LC_COLLATE=fr_FR.UTF-8     LC_MONETARY=fr_FR.UTF-8   
 [6] LC_MESSAGES=fr_FR.UTF-8    LC_PAPER=fr_FR.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Paris
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rgrass_0.4-2

loaded via a namespace (and not attached):
 [1] utf8_1.2.4        R6_2.5.1          codetools_0.2-20  cellranger_1.1.0  tidyselect_1.2.1  readxl_1.4.3      e1071_1.7-14      magrittr_2.0.3   
 [9] glue_1.7.0        tibble_3.2.1      pkgconfig_2.0.3   dplyr_1.1.4       generics_0.1.3    lifecycle_1.0.4   xml2_1.3.6        cli_3.6.2        
[17] fansi_1.0.6       terra_1.7-78      vctrs_0.6.5       proxy_0.4-27      class_7.3-22      compiler_4.4.0    rstudioapi_0.16.0 tools_4.4.0      
[25] pillar_1.9.0      Rcpp_1.0.12       rlang_1.1.3 

> loc2 <- initGRASS() #return error message
No gisBase set. Trying to detect from the GRASS_INSTALLATION environment variable.
Taking gisBase value from GRASS_INSTALLATION: /usr/lib/grass83
A GISRC file /home/avallet/.grassrc8 already exists.
Do you want to override ('no' will abort)? (y/n) y
Overriding. Avoid this question by setting override = TRUE
Error in read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html,  : 
  Premature end of data in tag guisection line 1 [77]
De plus : Message d'avis :
Dans readLines(outFile) :
  ligne finale incomplète trouvée dans '/tmp/RtmpoKhL2k/file3b32eaff9ed7'
Erreur dans parseGRASS(cmd, legacyExec = legacyExec) : g.region not parsed
> traceback()
5: stop(paste(cmd, "not parsed"))
4: parseGRASS(cmd, legacyExec = legacyExec)
3: doGRASS(cmd, flags = flags, ..., parameters = parameters, echoCmd = echoCmd, 
       legacyExec = legacyExec)
2: execGRASS("g.region", save = "input", flags = "overwrite", ignore.stderr = ignore.stderr)
1: initGRASS()

I thought I managed to downgrade rgrass to version 0.3-9 in my previous message, but indeed, not : when I uninstall the package and force the installation of version 0.3-9, version 0.4-2 is automatically installed (see bellow). I have to figure out how I can install correctly this previous version before being able to make the required test with version 0.3-9. Sorry for that.

> remove.packages("rgrass", lib="~/R/x86_64-pc-linux-gnu-library/4.4")
> install.packages("rgrass", version='0.3-9')
Error in install.packages : Updating loaded packages

Restarting R session...

> install.packages("rgrass", version = "0.3-9")
Installation du package dans ‘/home/avallet/R/x86_64-pc-linux-gnu-library/4.4’
(car ‘lib’ n'est pas spécifié)
essai de l'URL 'https://cloud.r-project.org/src/contrib/rgrass_0.4-2.tar.gz'
Content type 'application/x-gzip' length 925918 bytes (904 KB)
==================================================
downloaded 904 KB

* installing *source* package ‘rgrass’ ...
** package ‘rgrass’ correctement décompressé et sommes MD5 vérifiées
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgrass)

Les packages source téléchargés sont dans
	‘/tmp/RtmpS0RABV/downloaded_packages’

[rsbivand]

Get 0.3-9 from https://cran.r-project.org/src/contrib/Archive/rgrass/rgrass_0.3-9.tar.gz and use:
install.packges("rgrass_0.3-9.tar.gz") assuming you downloaded to your working directory.

[amelinevallet]

I have managed to install rgrass 0.3-9, here is session and traceback info:

> remove.packages("rgrass", lib="~/R/x86_64-pc-linux-gnu-library/4.4")
> library(devtools)
Le chargement a nécessité le package : usethis
> 
> # Install the specific version of rgrass
> install_version("rgrass", version = "0.3-9", repos = "http://cran.us.r-project.org")
Downloading package from url: http://cran.us.r-project.org/src/contrib/Archive/rgrass/rgrass_0.3-9.tar.gz
Installation du package dans ‘/home/avallet/R/x86_64-pc-linux-gnu-library/4.4’
(car ‘lib’ n'est pas spécifié)
* installing *source* package ‘rgrass’ ...
** package ‘rgrass’ correctement décompressé et sommes MD5 vérifiées
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgrass)
> Sys.setenv("GRASS_INSTALLATION"="/usr/lib/grass83")
> library(rgrass)
> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C               LC_TIME=fr_FR.UTF-8       
 [4] LC_COLLATE=fr_FR.UTF-8     LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Paris
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] devtools_2.4.5 usethis_2.2.3  rgrass_0.3-9  

loaded via a namespace (and not attached):
 [1] miniUI_0.1.1.1    dplyr_1.1.4       compiler_4.4.0    promises_1.3.0    tidyselect_1.2.1 
 [6] Rcpp_1.0.12       xml2_1.3.6        stringr_1.5.1     later_1.3.2       readxl_1.4.3     
[11] fastmap_1.2.0     mime_0.12         R6_2.5.1          generics_0.1.3    htmlwidgets_1.6.4
[16] tibble_3.2.1      profvis_0.3.8     shiny_1.8.1.1     pillar_1.9.0      rlang_1.1.3      
[21] utf8_1.2.4        cachem_1.1.0      stringi_1.8.4     httpuv_1.6.15     fs_1.6.4         
[26] pkgload_1.3.4     memoise_2.0.1     cli_3.6.2         magrittr_2.0.3    class_7.3-22     
[31] digest_0.6.35     rstudioapi_0.16.0 xtable_1.8-4      remotes_2.5.0     lifecycle_1.0.4  
[36] vctrs_0.6.5       proxy_0.4-27      glue_1.7.0        cellranger_1.1.0  urlchecker_1.0.1 
[41] sessioninfo_1.2.2 pkgbuild_1.4.4    e1071_1.7-14      fansi_1.0.6       purrr_1.0.2      
[46] pkgconfig_2.0.3   tools_4.4.0       ellipsis_0.3.2    htmltools_0.5.8.1
> loc2 <- initGRASS() #return error message
A GRASS location (defined by /home/avallet/.grassrc8) is already in use.
Do you want to override ('no' will abort)? (y/n) y
Overriding. Avoid this question by setting override = TRUE
No gisBase set. Trying to detect from the GRASS_INSTALLATION environment variable.
Taking gisBase value from GRASS_INSTALLATION: /usr/lib/grass83
Error in read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html,  : 
  Premature end of data in tag guisection line 1 [77]
De plus : Message d'avis :
Dans readLines(outFile) :
  ligne finale incomplète trouvée dans '/tmp/RtmpS0RABV/file3b3cdd27650a'
Erreur dans parseGRASS(cmd, legacyExec = legacyExec) : g.region not parsed
> traceback()
5: stop(paste(cmd, "not parsed"))
4: parseGRASS(cmd, legacyExec = legacyExec)
3: doGRASS(cmd, flags = flags, ..., parameters = parameters, echoCmd = echoCmd, 
       legacyExec = legacyExec)
2: execGRASS("g.region", save = "input", flags = "overwrite", ignore.stderr = ignore.stderr)
1: initGRASS()

[rsbivand]

Please install from the source package downloaded from CRAN only, do not use devtools or RStudio. The error message shows read_xml.raw being used; this method is in xml2, so should not be seen in 0.3-9 at all.

The underlying problem may be that GRASS 8.3.2 is emitting XML that is not in UTF-8 encoding in your locale. R sees your locale as fr_FR.UTF-8, which is fine, but how does GRASS see it? It may also be an incomplete string that irritates xml2.

[amelinevallet]

Yes, indeed session_info() indicates a mismatch between loaded and on-disk rgrass 0.3-9 versions when I installed it with devtools.

> session_info()
─ Session info ──────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.4.0 (2024-04-24)
 os       Ubuntu 22.04.4 LTS
 system   x86_64, linux-gnu
 ui       RStudio
 language (EN)
 collate  fr_FR.UTF-8
 ctype    fr_FR.UTF-8
 tz       Europe/Paris
 date     2024-06-07
 rstudio  2024.04.1+748 Chocolate Cosmos (server)
 pandoc   2.9.2.1 @ /usr/bin/pandoc

─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────
 ! package     * version date (UTC) lib source
   cachem        1.1.0   2024-05-16 [3] CRAN (R 4.4.0)
   cellranger    1.1.0   2016-07-27 [3] CRAN (R 4.1.0)
   class         7.3-22  2023-05-03 [4] CRAN (R 4.3.1)
   cli           3.6.2   2023-12-11 [3] CRAN (R 4.3.2)
   devtools    * 2.4.5   2022-10-11 [2] CRAN (R 4.2.1)
   digest        0.6.35  2024-03-11 [3] CRAN (R 4.3.3)
   dplyr         1.1.4   2023-11-17 [3] CRAN (R 4.3.2)
   e1071         1.7-14  2023-12-06 [2] CRAN (R 4.3.2)
   ellipsis      0.3.2   2021-04-29 [3] CRAN (R 4.1.1)
   fansi         1.0.6   2023-12-08 [3] CRAN (R 4.3.2)
   fastmap       1.2.0   2024-05-15 [3] CRAN (R 4.4.0)
   fs            1.6.4   2024-04-25 [3] CRAN (R 4.3.3)
   generics      0.1.3   2022-07-05 [3] CRAN (R 4.2.1)
   glue          1.7.0   2024-01-09 [3] CRAN (R 4.3.2)
   htmltools     0.5.8.1 2024-04-04 [3] CRAN (R 4.3.3)
   htmlwidgets   1.6.4   2023-12-06 [3] CRAN (R 4.3.2)
   httpuv        1.6.15  2024-03-26 [2] CRAN (R 4.3.3)
   later         1.3.2   2023-12-06 [2] CRAN (R 4.3.2)
   lifecycle     1.0.4   2023-11-07 [3] CRAN (R 4.3.2)
   magrittr      2.0.3   2022-03-30 [3] CRAN (R 4.1.3)
   memoise       2.0.1   2021-11-26 [3] CRAN (R 4.1.2)
   mime          0.12    2021-09-28 [3] CRAN (R 4.1.1)
   miniUI        0.1.1.1 2018-05-18 [2] CRAN (R 4.1.1)
   pillar        1.9.0   2023-03-22 [3] CRAN (R 4.2.3)
   pkgbuild      1.4.4   2024-03-17 [3] CRAN (R 4.3.3)
   pkgconfig     2.0.3   2019-09-22 [3] CRAN (R 4.0.1)
   pkgload       1.3.4   2024-01-16 [3] CRAN (R 4.3.2)
   profvis       0.3.8   2023-05-02 [3] CRAN (R 4.3.0)
   promises      1.3.0   2024-04-05 [2] CRAN (R 4.3.3)
   proxy         0.4-27  2022-06-09 [2] CRAN (R 4.2.0)
   purrr         1.0.2   2023-08-10 [3] CRAN (R 4.3.1)
   R6            2.5.1   2021-08-19 [3] CRAN (R 4.1.1)
   Rcpp          1.0.12  2024-01-09 [3] CRAN (R 4.3.2)
   readxl        1.4.3   2023-07-06 [3] CRAN (R 4.3.1)
   remotes       2.5.0   2024-03-17 [3] CRAN (R 4.3.3)
 V rgrass      * 0.4-2   2023-09-10 [1] CRAN (R 4.4.0) (on disk 0.3.9)
   rlang         1.1.3   2024-01-10 [3] CRAN (R 4.3.2)
   rstudioapi    0.16.0  2024-03-24 [3] CRAN (R 4.3.3)
   sessioninfo   1.2.2   2021-12-06 [3] CRAN (R 4.1.2)
   shiny         1.8.1.1 2024-04-02 [2] CRAN (R 4.3.3)
   stringi       1.8.4   2024-05-06 [2] CRAN (R 4.4.0)
   stringr       1.5.1   2023-11-14 [3] CRAN (R 4.3.2)
   tibble        3.2.1   2023-03-20 [3] CRAN (R 4.2.3)
   tidyselect    1.2.1   2024-03-11 [3] CRAN (R 4.3.3)
   urlchecker    1.0.1   2021-11-30 [3] CRAN (R 4.2.1)
   usethis     * 2.2.3   2024-02-19 [3] CRAN (R 4.3.2)
   utf8          1.2.4   2023-10-22 [3] CRAN (R 4.3.2)
   vctrs         0.6.5   2023-12-01 [3] CRAN (R 4.3.2)
   xml2          1.3.6   2023-12-04 [3] CRAN (R 4.3.2)
   xtable        1.8-4   2019-04-21 [2] CRAN (R 4.1.1)

 [1] /home/avallet/R/x86_64-pc-linux-gnu-library/4.4
 [2] /usr/local/lib/R/site-library
 [3] /usr/lib/R/site-library
 [4] /usr/lib/R/library

 V ── Loaded and on-disk version mismatch.

I re-installed rgrass 0.3-9 version from the source package as indicated. Here is the session_info and traceback info:

download.file("https://cran.r-project.org/src/contrib/Archive/rgrass/rgrass_0.3-9.tar.gz", "/home/avallet/rgrass_0.3-9.tar.gz", method = "auto")
essai de l'URL 'https://cran.r-project.org/src/contrib/Archive/rgrass/rgrass_0.3-9.tar.gz'
Content type 'application/x-gzip' length 923084 bytes (901 KB)
==================================================
downloaded 901 KB

remove.packages("rgrass", lib="~/R/x86_64-pc-linux-gnu-library/4.4")

> install.packages("rgrass_0.3-9.tar.gz")
Installation du package dans ‘/home/avallet/R/x86_64-pc-linux-gnu-library/4.4’
(car ‘lib’ n'est pas spécifié)
supposition de 'repos = NULL' à partir de 'pkgs'
* installing *source* package ‘rgrass’ ...
** package ‘rgrass’ correctement décompressé et sommes MD5 vérifiées
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgrass)

> install.packages("rgrass_0.3-9.tar.gz")
Installation du package dans ‘/home/avallet/R/x86_64-pc-linux-gnu-library/4.4’
(car ‘lib’ n'est pas spécifié)
supposition de 'repos = NULL' à partir de 'pkgs'
* installing *source* package ‘rgrass’ ...
** package ‘rgrass’ correctement décompressé et sommes MD5 vérifiées
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgrass)
> Sys.setenv("GRASS_INSTALLATION"="/usr/lib/grass83")
> library(rgrass)
Le chargement a nécessité le package : XML
GRASS GIS interface loaded with GRASS version: (GRASS not running)
> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C               LC_TIME=fr_FR.UTF-8       
 [4] LC_COLLATE=fr_FR.UTF-8     LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Paris
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rgrass_0.3-9    XML_3.99-0.16.1

loaded via a namespace (and not attached):
 [1] utf8_1.2.4        R6_2.5.1          codetools_0.2-20  cellranger_1.1.0  tidyselect_1.2.1 
 [6] readxl_1.4.3      e1071_1.7-14      magrittr_2.0.3    glue_1.7.0        tibble_3.2.1     
[11] pkgconfig_2.0.3   dplyr_1.1.4       generics_0.1.3    lifecycle_1.0.4   cli_3.6.2        
[16] fansi_1.0.6       terra_1.7-78      vctrs_0.6.5       proxy_0.4-27      class_7.3-22     
[21] compiler_4.4.0    rstudioapi_0.16.0 tools_4.4.0       pillar_1.9.0      Rcpp_1.0.12      
[26] rlang_1.1.3      
> loc2 <- initGRASS() #return error message
No gisBase set. Trying to detect from the GRASS_INSTALLATION environment variable.
Taking gisBase value from GRASS_INSTALLATION: /usr/lib/grass83
A GISRC file /home/avallet/.grassrc8 already exists.
Do you want to override ('no' will abort)? (y/n) y
Overriding. Avoid this question by setting override = TRUE
Premature end of data in tag guisection line 349
Error : 1: Premature end of data in tag guisection line 349

De plus : Message d'avis :
Dans readLines(outFile) :
  ligne finale incomplète trouvée dans '/tmp/RtmpPh6psJ/file3b5f7453979a0'
Erreur dans parseGRASS(cmd, legacyExec = legacyExec) : g.region not parsed
> traceback()
5: stop(paste(cmd, "not parsed"))
4: parseGRASS(cmd, legacyExec = legacyExec)
3: doGRASS(cmd, flags = flags, ..., parameters = parameters, echoCmd = echoCmd, 
       legacyExec = legacyExec)
2: execGRASS("g.region", save = "input", flags = "overwrite", ignore.stderr = ignore.stderr)
1: initGRASS()
> library(devtools)
> session_info()
─ Session info ──────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.4.0 (2024-04-24)
 os       Ubuntu 22.04.4 LTS
 system   x86_64, linux-gnu
 ui       RStudio
 language (EN)
 collate  fr_FR.UTF-8
 ctype    fr_FR.UTF-8
 tz       Europe/Paris
 date     2024-06-07
 rstudio  2024.04.1+748 Chocolate Cosmos (server)
 pandoc   2.9.2.1 @ /usr/bin/pandoc

─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────
 package     * version     date (UTC) lib source
 cachem        1.1.0       2024-05-16 [3] CRAN (R 4.4.0)
 cellranger    1.1.0       2016-07-27 [3] CRAN (R 4.1.0)
 class         7.3-22      2023-05-03 [4] CRAN (R 4.3.1)
 cli           3.6.2       2023-12-11 [3] CRAN (R 4.3.2)
 codetools     0.2-20      2024-03-31 [4] CRAN (R 4.3.3)
 devtools    * 2.4.5       2022-10-11 [2] CRAN (R 4.2.1)
 digest        0.6.35      2024-03-11 [3] CRAN (R 4.3.3)
 dplyr         1.1.4       2023-11-17 [3] CRAN (R 4.3.2)
 e1071         1.7-14      2023-12-06 [2] CRAN (R 4.3.2)
 ellipsis      0.3.2       2021-04-29 [3] CRAN (R 4.1.1)
 fansi         1.0.6       2023-12-08 [3] CRAN (R 4.3.2)
 fastmap       1.2.0       2024-05-15 [3] CRAN (R 4.4.0)
 fs            1.6.4       2024-04-25 [3] CRAN (R 4.3.3)
 generics      0.1.3       2022-07-05 [3] CRAN (R 4.2.1)
 glue          1.7.0       2024-01-09 [3] CRAN (R 4.3.2)
 htmltools     0.5.8.1     2024-04-04 [3] CRAN (R 4.3.3)
 htmlwidgets   1.6.4       2023-12-06 [3] CRAN (R 4.3.2)
 httpuv        1.6.15      2024-03-26 [2] CRAN (R 4.3.3)
 later         1.3.2       2023-12-06 [2] CRAN (R 4.3.2)
 lifecycle     1.0.4       2023-11-07 [3] CRAN (R 4.3.2)
 magrittr      2.0.3       2022-03-30 [3] CRAN (R 4.1.3)
 memoise       2.0.1       2021-11-26 [3] CRAN (R 4.1.2)
 mime          0.12        2021-09-28 [3] CRAN (R 4.1.1)
 miniUI        0.1.1.1     2018-05-18 [2] CRAN (R 4.1.1)
 pillar        1.9.0       2023-03-22 [3] CRAN (R 4.2.3)
 pkgbuild      1.4.4       2024-03-17 [3] CRAN (R 4.3.3)
 pkgconfig     2.0.3       2019-09-22 [3] CRAN (R 4.0.1)
 pkgload       1.3.4       2024-01-16 [3] CRAN (R 4.3.2)
 profvis       0.3.8       2023-05-02 [3] CRAN (R 4.3.0)
 promises      1.3.0       2024-04-05 [2] CRAN (R 4.3.3)
 proxy         0.4-27      2022-06-09 [2] CRAN (R 4.2.0)
 purrr         1.0.2       2023-08-10 [3] CRAN (R 4.3.1)
 R6            2.5.1       2021-08-19 [3] CRAN (R 4.1.1)
 Rcpp          1.0.12      2024-01-09 [3] CRAN (R 4.3.2)
 readxl        1.4.3       2023-07-06 [3] CRAN (R 4.3.1)
 remotes       2.5.0       2024-03-17 [3] CRAN (R 4.3.3)
 rgrass      * 0.3-9       2023-09-10 [1] CRAN (R 4.4.0)
 rlang         1.1.3       2024-01-10 [3] CRAN (R 4.3.2)
 rstudioapi    0.16.0      2024-03-24 [3] CRAN (R 4.3.3)
 sessioninfo   1.2.2       2021-12-06 [3] CRAN (R 4.1.2)
 shiny         1.8.1.1     2024-04-02 [2] CRAN (R 4.3.3)
 stringi       1.8.4       2024-05-06 [2] CRAN (R 4.4.0)
 stringr       1.5.1       2023-11-14 [3] CRAN (R 4.3.2)
 terra         1.7-78      2024-05-22 [1] CRAN (R 4.4.0)
 tibble        3.2.1       2023-03-20 [3] CRAN (R 4.2.3)
 tidyselect    1.2.1       2024-03-11 [3] CRAN (R 4.3.3)
 unixtools   * 0.1-1       2024-05-30 [1] local
 urlchecker    1.0.1       2021-11-30 [3] CRAN (R 4.2.1)
 usethis     * 2.2.3       2024-02-19 [3] CRAN (R 4.3.2)
 utf8          1.2.4       2023-10-22 [3] CRAN (R 4.3.2)
 vctrs         0.6.5       2023-12-01 [3] CRAN (R 4.3.2)
 XML         * 3.99-0.16.1 2024-01-22 [2] CRAN (R 4.3.2)
 xtable        1.8-4       2019-04-21 [2] CRAN (R 4.1.1)

 [1] /home/avallet/R/x86_64-pc-linux-gnu-library/4.4
 [2] /usr/local/lib/R/site-library
 [3] /usr/lib/R/site-library
 [4] /usr/lib/R/library

[amelinevallet]

Regarding your suggestion about encoding, I checked GRASS and R sessions locales.

Here is what I obtained for GRASS

avallet@tess:/usr/lib/R/library$ grass --exec env | grep LC_
grass --exec env | grep LANG
LC_CTYPE=fr_FR.UTF-8
LC_MESSAGES=fr_FR.UTF-8
LC_TIME=fr_FR.UTF-8
LC_COLLATE=fr_FR.UTF-8
LC_MONETARY=fr_FR.UTF-8
LC_PAPER=fr_FR.UTF-8
LC_NAME=fr_FR.UTF-8
LC_ADDRESS=fr_FR.UTF-8
LC_TELEPHONE=fr_FR.UTF-8
LC_MEASUREMENT=fr_FR.UTF-8
LC_IDENTIFICATION=fr_FR.UTF-8
LC_NUMERIC=C
LANG=fr_FR
LANGUAGE=fr_FR

And here for R:

Sys.getlocale()
[1] "LC_CTYPE=fr_FR.UTF-8;LC_NUMERIC=C;LC_TIME=fr_FR.UTF-8;LC_COLLATE=fr_FR.UTF-8;LC_MONETARY=fr_FR.UTF-8;LC_MESSAGES=fr_FR.UTF-8;LC_PAPER=fr_FR.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=fr_FR.UTF-8;LC_IDENTIFICATION=C"

So if I understand properly, both use the same encoding (fr_FR.UTF-8)? Is there something else to check for GRASS? @rsbivand do you know where the xml files generated by GRASS are located ? I could check if their encoding really is fr_FR.UTF-8, or if there is an incomplete string somewhere ?

[rsbivand]

With XML, the error is: Premature end of data in tag guisection line 349, while in xml2 it was Premature end of data in tag guisection line 1 [77] - which maybe suggests that the XML generated by --interface-description is incomplete, for this version of GRASS. Do you still have GRASS 8.2 installed - if so, could you try to point GRASS_INSTALLATION at 8.2 and try again?

[amelinevallet]

I removed GRASS 8.2 version, but I am re-installing it right now.

[amelinevallet]

To install GRASS 8.2, and easily switch between GRASS versions, I used the following lines:

#Download source code for version 8.2
wget https://grass.osgeo.org/grass82/source/grass-8.2.0.tar.gz
tar -zxvf grass-8.2.0.tar.gz
cd grass-8.2.0

#install GRASS GIS 8.2 in /usr/lib/grass82
./configure --prefix=/usr/lib/grass82
make
sudo make install

#Add GRASS 8.3 to the PATH with the grass83 alias
alias grass83="/usr/bin/grass"
export PATH=/usr/bin/grass:$PATH

#Add GRASS 8.2 to the PATH with an other alias
alias grass82='/usr/lib/grass82/bin/grass'
export PATH=/usr/lib/grass82/bin:$PATH

#NB : I do not know why paths of the executables are different, probably something I did differently between the two installations?

#Reload the environment variables
source ~/.bashrc

[amelinevallet]

With GRASS 8.2 I do not receive the same error message:

> Sys.setenv("GRASS_INSTALLATION"="/usr/lib/grass82/grass82")
> library(rgrass)
> library(terra)
terra 1.7.78
> library(sf)
Linking to GEOS 3.11.1, GDAL 3.4.1, PROJ 8.2.1; sf_use_s2() is TRUE
> library(raster)
Le chargement a nécessité le package : sp
> library(unixtools)
> library(doParallel)
Le chargement a nécessité le package : foreach
Le chargement a nécessité le package : iterators
Le chargement a nécessité le package : parallel
> library(tidyverse)
── Attaching core tidyverse packages ─────────────────────────────────────────────────── tidyverse 2.0.0 ──
✔ dplyr     1.1.4     ✔ readr     2.1.5
✔ forcats   1.0.0     ✔ stringr   1.5.1
✔ ggplot2   3.5.1     ✔ tibble    3.2.1
✔ lubridate 1.9.3     ✔ tidyr     1.3.1
✔ purrr     1.0.2     
── Conflicts ───────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ purrr::%||%()       masks base::%||%()
✖ purrr::accumulate() masks foreach::accumulate()
✖ tidyr::extract()    masks raster::extract(), terra::extract()
✖ dplyr::filter()     masks stats::filter()
✖ dplyr::lag()        masks stats::lag()
✖ dplyr::select()     masks raster::select()
✖ purrr::when()       masks foreach::when()
ℹ Use the conflicted package to force all conflicts to become errors
> set.tempdir("/mnt/dataIn/data_agata/Advanced_DEM_indices/temporary_files")
> GRASS_INSTALLATION <- Sys.getenv("GRASS_INSTALLATION")
> file.info(GRASS_INSTALLATION)$isdir[1]
[1] TRUE
> GRASS_INSTALLATION
[1] "/usr/lib/grass82/grass82"
> 
> path <- "/mnt/dataIn/data_agata/DEM/altitude.tif" #TO CHANGE MANUALLY WITH DESTRIPPED RASTER
> r <- rast(path)
> 
> loc <- initGRASS(gisBase=GRASS_INSTALLATION, home=tempdir(), SG=r, override=TRUE, remove_GISRC = TRUE)

I am not sure to understand what is the problem, but apparently, with the downgraded GRASS 8.2 version and rgrass 0.3-9, the error do not appear anymore. So we do have a workaround until the issue with GRASS 8.3 is more clearly identified, it is a good news !!! Thanks,

[rsbivand]

Could you please try with rgrass 0.4-2?

[amelinevallet]

I just tried, it worked with rgrass 0.4-2 too.

Here is the session_info for the test with rgrass 0.3-9

> Sys.setenv("GRASS_INSTALLATION"="/usr/local/grass82")
> library(rgrass)
Le chargement a nécessité le package : XML
GRASS GIS interface loaded with GRASS version: (GRASS not running)
> library(terra)
terra 1.7.78
> library(sf)
Linking to GEOS 3.11.1, GDAL 3.4.1, PROJ 8.2.1; sf_use_s2() is TRUE
> library(raster)
Le chargement a nécessité le package : sp
> library(unixtools)
> library(doParallel)
Le chargement a nécessité le package : foreach
Le chargement a nécessité le package : iterators
Le chargement a nécessité le package : parallel
> library(tidyverse)
── Attaching core tidyverse packages ─────────────────────────────────────────────────── tidyverse 2.0.0 ──
✔ dplyr     1.1.4     ✔ readr     2.1.5
✔ forcats   1.0.0     ✔ stringr   1.5.1
✔ ggplot2   3.5.1     ✔ tibble    3.2.1
✔ lubridate 1.9.3     ✔ tidyr     1.3.1
✔ purrr     1.0.2     
── Conflicts ───────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ purrr::%||%()       masks base::%||%()
✖ purrr::accumulate() masks foreach::accumulate()
✖ tidyr::extract()    masks raster::extract(), terra::extract()
✖ dplyr::filter()     masks stats::filter()
✖ dplyr::lag()        masks stats::lag()
✖ dplyr::select()     masks raster::select()
✖ purrr::when()       masks foreach::when()
ℹ Use the conflicted package to force all conflicts to become errors
> 
> set.tempdir("/mnt/dataIn/data_agata/Advanced_DEM_indices/temporary_files")
> GRASS_INSTALLATION <- Sys.getenv("GRASS_INSTALLATION")
> file.info(GRASS_INSTALLATION)$isdir[1]
[1] TRUE
> GRASS_INSTALLATION
[1] "/usr/local/grass82"
> 
> path <- "/mnt/dataIn/data_agata/DEM/altitude.tif" #TO CHANGE MANUALLY WITH DESTRIPPED RASTER
> r <- rast(path)
> 
> loc <- initGRASS(gisBase=GRASS_INSTALLATION, home=tempdir(), SG=r, override=TRUE, remove_GISRC = TRUE)
> 
> write_RAST(as(raster(r), "SpatialGridDataFrame"), vname="altitude", overwrite = TRUE)
 100%
SpatialGridDataFrame read into GRASS using r.in.bin
> 
> 
> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C               LC_TIME=fr_FR.UTF-8       
 [4] LC_COLLATE=fr_FR.UTF-8     LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Paris
tzcode source: system (glibc)

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] lubridate_1.9.3   forcats_1.0.0     stringr_1.5.1     dplyr_1.1.4       purrr_1.0.2      
 [6] readr_2.1.5       tidyr_1.3.1       tibble_3.2.1      ggplot2_3.5.1     tidyverse_2.0.0  
[11] doParallel_1.0.17 iterators_1.0.14  foreach_1.5.2     unixtools_0.1-1   raster_3.6-26    
[16] sp_2.1-4          sf_1.0-16         terra_1.7-78      rgrass_0.3-9      XML_3.99-0.16.1  

loaded via a namespace (and not attached):
 [1] utf8_1.2.4         generics_0.1.3     class_7.3-22       KernSmooth_2.23-24 stringi_1.8.4     
 [6] lattice_0.22-6     hms_1.1.3          magrittr_2.0.3     timechange_0.3.0   grid_4.4.0        
[11] cellranger_1.1.0   e1071_1.7-14       DBI_1.2.2          fansi_1.0.6        scales_1.3.0      
[16] codetools_0.2-20   cli_3.6.2          rlang_1.1.3        units_0.8-5        munsell_0.5.1     
[21] withr_3.0.0        tools_4.4.0        tzdb_0.4.0         colorspace_2.1-0   vctrs_0.6.5       
[26] R6_2.5.1           proxy_0.4-27       lifecycle_1.0.4    classInt_0.4-10    pkgconfig_2.0.3   
[31] pillar_1.9.0       gtable_0.3.5       glue_1.7.0         Rcpp_1.0.12        tidyselect_1.2.1  
[36] rstudioapi_0.16.0  compiler_4.4.0     readxl_1.4.3   

And here for the test with rgrass 0.4-2

> install.packages("rgrass")
Installation du package dans ‘/home/avallet/R/x86_64-pc-linux-gnu-library/4.4’
(car ‘lib’ n'est pas spécifié)
essai de l'URL 'https://cloud.r-project.org/src/contrib/rgrass_0.4-2.tar.gz'
Content type 'application/x-gzip' length 925918 bytes (904 KB)
==================================================
downloaded 904 KB

* installing *source* package ‘rgrass’ ...
** package ‘rgrass’ correctement décompressé et sommes MD5 vérifiées
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgrass)

Les packages source téléchargés sont dans
	‘/tmp/RtmpjV4VEn/downloaded_packages’
> Sys.setenv("GRASS_INSTALLATION"="/usr/local/grass82")
> 
> library(rgrass)
GRASS GIS interface loaded with GRASS version: GRASS 8.2.2dev (2023)
and location: file4da7925d9589c
> library(terra)
terra 1.7.78
> library(sf)
Linking to GEOS 3.11.1, GDAL 3.4.1, PROJ 8.2.1; sf_use_s2() is TRUE
> library(raster)
Le chargement a nécessité le package : sp
> library(unixtools)
> library(doParallel)
Le chargement a nécessité le package : foreach
Le chargement a nécessité le package : iterators
Le chargement a nécessité le package : parallel
> library(tidyverse)
── Attaching core tidyverse packages ─────────────────────────────────────────────────── tidyverse 2.0.0 ──
✔ dplyr     1.1.4     ✔ readr     2.1.5
✔ forcats   1.0.0     ✔ stringr   1.5.1
✔ ggplot2   3.5.1     ✔ tibble    3.2.1
✔ lubridate 1.9.3     ✔ tidyr     1.3.1
✔ purrr     1.0.2     
── Conflicts ───────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ purrr::%||%()       masks base::%||%()
✖ purrr::accumulate() masks foreach::accumulate()
✖ tidyr::extract()    masks raster::extract(), terra::extract()
✖ dplyr::filter()     masks stats::filter()
✖ dplyr::lag()        masks stats::lag()
✖ dplyr::select()     masks raster::select()
✖ purrr::when()       masks foreach::when()
ℹ Use the conflicted package to force all conflicts to become errors
> 
> set.tempdir("/mnt/dataIn/data_agata/Advanced_DEM_indices/temporary_files")
> GRASS_INSTALLATION <- Sys.getenv("GRASS_INSTALLATION")
> file.info(GRASS_INSTALLATION)$isdir[1]
[1] TRUE
> GRASS_INSTALLATION
[1] "/usr/local/grass82"
> 
> path <- "/mnt/dataIn/data_agata/DEM/altitude.tif" #TO CHANGE MANUALLY WITH DESTRIPPED RASTER
> r <- rast(path)
> 
> loc <- initGRASS(gisBase=GRASS_INSTALLATION, home=tempdir(), SG=r, override=TRUE, remove_GISRC = TRUE)
> 
> write_RAST(as(raster(r), "SpatialGridDataFrame"), vname="altitude", overwrite = TRUE)
 100%
SpatialGridDataFrame read into GRASS using r.in.bin
> 
> 
> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C               LC_TIME=fr_FR.UTF-8       
 [4] LC_COLLATE=fr_FR.UTF-8     LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Paris
tzcode source: system (glibc)

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] lubridate_1.9.3   forcats_1.0.0     stringr_1.5.1     dplyr_1.1.4       purrr_1.0.2      
 [6] readr_2.1.5       tidyr_1.3.1       tibble_3.2.1      ggplot2_3.5.1     tidyverse_2.0.0  
[11] doParallel_1.0.17 iterators_1.0.14  foreach_1.5.2     unixtools_0.1-1   raster_3.6-26    
[16] sp_2.1-4          sf_1.0-16         terra_1.7-78      rgrass_0.4-2     

loaded via a namespace (and not attached):
 [1] utf8_1.2.4         generics_0.1.3     class_7.3-22       xml2_1.3.6         KernSmooth_2.23-24
 [6] stringi_1.8.4      lattice_0.22-6     hms_1.1.3          magrittr_2.0.3     grid_4.4.0        
[11] timechange_0.3.0   e1071_1.7-14       DBI_1.2.2          fansi_1.0.6        scales_1.3.0      
[16] codetools_0.2-20   cli_3.6.2          rlang_1.1.3        units_0.8-5        munsell_0.5.1     
[21] withr_3.0.0        tools_4.4.0        tzdb_0.4.0         colorspace_2.1-0   vctrs_0.6.5       
[26] R6_2.5.1           proxy_0.4-27       lifecycle_1.0.4    classInt_0.4-10    pkgconfig_2.0.3   
[31] pillar_1.9.0       gtable_0.3.5       glue_1.7.0         Rcpp_1.0.12        tidyselect_1.2.1  
[36] rstudioapi_0.16.0  compiler_4.4.0 

I hope this information is useful

[amelinevallet]

A pbm raised when using GRASS 8.2 : it is not possible to download addons from github with g.extension. The problem is documented here: https://gis.stackexchange.com/questions/474069/cannot-install-grass-addons-in-grass-8-2-ubuntu-jammy, and the workaround proposition works well.