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tsgajiaruidong2017
tsga
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jiaruidong2017
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Add smap soil moisture config files (#218)
Adds config files for SMAP soil moisture data type. The changes here are intended to be used for JEDI soil DA in the land offline workflow (outside of GW). The corresponding pygfs changes are included in the PR NOAA-PSL/land-offline_workflow#58 Companion GDASApp PR: #2011 --------- Co-authored-by: Jiarui Dong <[email protected]>
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‎parm/jcb-gdas/algorithm/soil/soil_addincrement.yaml.j2‎

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state geometry:
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fms initialization:
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namelist filename: ./fv3jedi/fmsmpp.nml
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field table filename: ./fv3jedi/field_table
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akbk: ./fv3jedi/akbk.nc4
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layout:
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- {{ soil_layout_x }}
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- {{ soil_layout_y }}
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npx: {{ soil_npx_ges }}
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npy: {{ soil_npy_ges }}
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npz: {{ soil_npz_ges }}
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# field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_history.yaml
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increment geometry:
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fms initialization:
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namelist filename: ./fv3jedi/fmsmpp.nml
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field table filename: ./fv3jedi/field_table
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akbk: ./fv3jedi/akbk.nc4
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layout:
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- {{ soil_layout_x }}
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- {{ soil_layout_y }}
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npx: {{ soil_npx_anl }}
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npy: {{ soil_npy_anl }}
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npz: {{ soil_npz_anl }}
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# field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_fv3inc.yaml
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state:
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state variables:
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- soilMoistureVolumetric
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- stc
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- totalSnowDepth
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- sheleg
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- vtype
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- slmsk
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- fraction_of_ice
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field io names:
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totalSnowDepth: snodl
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soilMoistureVolumetric: smc
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fraction_of_ice: fice
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datapath: ./bkg
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filetype: fms restart
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skip coupler file: true
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datetime: '{{ soil_background_time_iso }}'
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filename_sfcd: {{ soil_background_time_fv3 }}.sfc_data.nc
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increment:
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added variables:
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- soilMoistureVolumetric
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field io names:
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soilMoistureVolumetric: smc
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datapath: ./anl
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filetype: fms restart
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skip coupler file: true
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prefix: soilinc
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filename is datetime templated: true
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datetime: '{{ soil_background_time_iso }}'
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filename_sfcd: {{ soil_background_time_fv3 }}.sfc_data.nc
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output:
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datapath: ./anl
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prefix: soilanl
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filetype: fms restart
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skip coupler file: true
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filename is datetime templated: true
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datetime: '{{ soil_background_time_iso }}'
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filename_sfcd: {{ soil_background_time_fv3 }}.sfc_data.nc
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state variables:
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- soilMoistureVolumetric
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- stc
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- totalSnowDepth
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- sheleg
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- vtype
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- slmsk
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- fraction_of_ice
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field io names:
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soilMoistureVolumetric: smc
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totalSnowDepth: snodl
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fraction_of_ice: fice

‎parm/jcb-gdas/model/soil/soil_3dvar_outer_loop_1.yaml.j2‎

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- ninner: 50
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gradient norm reduction: 1e-10
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test: on
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geometry:
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fms initialization:
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namelist filename: {{ soil_fv3jedi_files_path }}/fmsmpp.nml
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field table filename: {{ soil_fv3jedi_files_path }}/field_table
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akbk: {{ soil_fv3jedi_files_path }}/akbk.nc4
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layout:
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- {{ soil_layout_x }}
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- {{ soil_layout_y }}
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npx: {{ soil_npx_anl }}
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npy: {{ soil_npy_anl }}
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npz: {{ soil_npz_anl }}
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time invariant fields:
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state fields:
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datetime: '{{ soil_background_time_iso }}'
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filetype: fms restart
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skip coupler file: true
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state variables:
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- filtered_orography
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- fraction_of_land
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field io names:
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filtered_orography: orog_filt
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fraction_of_land: land_frac
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datapath: {{ soil_orog_files_path }}/
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filename_orog: {{ soil_orog_prefix }}_oro_data.nc
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diagnostics:
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departures: bkgmob

‎parm/jcb-gdas/model/soil/soil_background.yaml.j2‎

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datapath: {{ soil_background_path }}
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filetype: fms restart
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skip coupler file: true
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datetime: '{{ soil_background_time_iso }}'
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state variables:
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- soilMoistureVolumetric
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- stc
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- totalSnowDepth
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- sheleg
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- vtype
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- slmsk
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- filtered_orography
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- fraction_of_ice
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- fraction_of_land
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field io names:
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soilMoistureVolumetric: smc
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totalSnowDepth: snodl
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filtered_orography: orog_filt
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fraction_of_ice: fice
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fraction_of_land: land_frac
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filename_sfcd: '{{ soil_background_time_fv3 }}.sfc_data.nc'
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filename_cplr: '{{ soil_background_time_fv3 }}.coupler.res'
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filename_orog: '{{ soil_orog_prefix }}_oro_data.nc'

‎parm/jcb-gdas/model/soil/soil_background_error.yaml.j2‎

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covariance model: SABER
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saber central block:
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saber block name: BUMP_NICAS
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calibration: #read:
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general:
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universe length-scale: 5000000.0
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drivers:
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multivariate strategy: univariate
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compute nicas: true #read global nicas: true
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write global nicas: true
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nicas:
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resolution: 4
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explicit length-scales: true
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horizontal length-scale:
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- groups:
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- soilMoistureVolumetric
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value: 1000000.0
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vertical length-scale:
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- groups:
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- soilMoistureVolumetric
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value: 1500.0
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interpolation type:
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- groups:
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- soilMoistureVolumetric
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type: c0
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same horizontal convolution: true
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io:
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data directory: ./berror
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files prefix: smc_bump_nicas_1000km_{{ soil_background_time_fv3 }}
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saber outer blocks:
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- saber block name: BUMP_StdDev
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read:
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drivers:
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compute variance: true
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variance:
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explicit stddev: true
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stddev:
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- variables:
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- soilMoistureVolumetric
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value: 0.2

‎parm/jcb-gdas/model/soil/soil_final_increment_fms.yaml.j2‎

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output:
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state component:
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datapath: ./anl
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prefix: soilinc
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filetype: fms restart
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filename_sfcd: '{{ soil_background_time_fv3 }}.sfc_data.nc'
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filename_cplr: '{{ soil_background_time_fv3 }}.coupler.res'
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state variables:
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- soilMoistureVolumetric
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- stc
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- totalSnowDepth
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- sheleg
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- vtype
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- slmsk
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field io names:
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soilMoistureVolumetric: smc
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totalSnowDepth: snodl
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geometry:
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fms initialization:
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namelist filename: "{{ soil_fv3jedi_files_path }}/fmsmpp.nml"
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field table filename: "{{ soil_fv3jedi_files_path }}/field_table"
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akbk: "{{ soil_fv3jedi_files_path }}/akbk.nc4"
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layout:
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- {{ soil_layout_x }}
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- {{ soil_layout_y }}
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npx: {{ soil_npx_ges }}
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npy: {{ soil_npy_ges }}
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npz: {{ soil_npz_ges }}

‎parm/jcb-gdas/model/soil/soil_geometry_background.yaml.j2‎

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fms initialization:
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namelist filename: "{{soil_fv3jedi_files_path}}/fmsmpp.nml"
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field table filename: "{{soil_fv3jedi_files_path}}/field_table"
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akbk: "{{soil_fv3jedi_files_path}}/akbk.nc4"
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layout:
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- {{soil_layout_x}}
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- {{soil_layout_y}}
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npx: {{soil_npx_ges}}
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npy: {{soil_npy_ges}}
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npz: {{soil_npz_ges}}

‎parm/jcb-gdas/model/soil/soil_output.yaml.j2‎

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state variables:
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- soilMoistureVolumetric
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- stc
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- totalSnowDepth
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- sheleg
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- vtype
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- slmsk
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- filtered_orography
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- fraction_of_ice
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- fraction_of_land
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field io names:
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soilMoistureVolumetric: smc
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totalSnowDepth: snodl
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filtered_orography: orog_filt
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fraction_of_ice: fice
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fraction_of_land: land_frac
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datapath: ./anl
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prefix: soil_finanl
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filetype: fms restart
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datetime: '{{ soil_background_time_iso }}'
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filename_sfcd: '{{ soil_background_time_fv3 }}.sfc_data.nc'
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filename_cplr: '{{ soil_background_time_fv3 }}.coupler.res'
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filename_orog: '{{ soil_orog_prefix }}_oro_data.nc'

‎parm/jcb-gdas/observation_chronicle/snow/t00z/ghcn_snow.yaml‎

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# Instrument metadata
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# -------------------
3-
commissioned: 1970-01-01T00:00:00
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commissioned: 1900-01-01T00:00:00
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observer_type: conventional # Type of chronicle to use
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‎parm/jcb-gdas/observation_chronicle/snow/t06z/ghcn_snow.yaml‎

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# Instrument metadata
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# -------------------
3-
commissioned: 1970-01-01T00:00:00
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commissioned: 1900-01-01T00:00:00
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observer_type: conventional # Type of chronicle to use
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‎parm/jcb-gdas/observation_chronicle/soil/smap_soil.yaml‎

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# Instrument metadata
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# -------------------
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commissioned: 2015-01-31T00:00:00
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observer_type: conventional # Type of chronicle to use
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window_option: max
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# observation type initial configuration
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# --------------------------------
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stations_to_reject: [fakelist]
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# Chronicle of changes for this observation type
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# ----------------------------------------

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