Test every variation on biolink_type query.

Author: gaurav

api/server.py

@@ -422,7 +422,7 @@ async def lookup(string: str,
                 taxa_filters.append(f'taxa:"{taxon}"')
 
             # We also need to include entries that don't have taxa specified.
-            taxa_filters.append('-taxa:[* TO *]')
+            taxa_filters.append('taxon_specific:false')
 
             # Combine all taxa filters.
             filters.append('(' + " OR ".join(taxa_filters) + ')')
@@ -467,7 +467,7 @@ async def lookup(string: str,
         "fields": "*, score",
         "params": inner_params,
     }
-    logging.debug(f"Query: {json.dumps(params, indent=2)}")
+    print(f"Query: {json.dumps(params, indent=2)}")
 
     query_url = f"http://{SOLR_HOST}:{SOLR_PORT}/solr/name_lookup/select"
     async with httpx.AsyncClient(timeout=None) as client:

tests/test_service.py

@@ -238,7 +238,25 @@ def test_only_taxa_queries():
         'string': 'FTD',
         'only_taxa': 'NCBITaxon:9031',
     })
-    results_all_ftd = response.json()
-    assert len(results_all_ftd) == 2
-    assert results_all_ftd[0]['curie'] == 'NCBIGene:378899'
-    assert results_all_ftd[1]['curie'] == 'MONDO:0010857'
+    results_ftd_with_only_taxon = response.json()
+    assert len(results_ftd_with_only_taxon) == 2
+    assert results_ftd_with_only_taxon[0]['curie'] == 'NCBIGene:378899'
+    assert results_ftd_with_only_taxon[1]['curie'] == 'MONDO:0010857'
+
+    response = client.get("/lookup", params={
+        'string': 'FTD',
+        'only_taxa': 'NCBITaxon:9031',
+        'biolink_type': 'biolink:Gene'
+    })
+    results_ftd_gene_with_only_taxon = response.json()
+    assert len(results_ftd_gene_with_only_taxon) == 1
+    assert results_ftd_gene_with_only_taxon[0]['curie'] == 'NCBIGene:378899'
+
+    response = client.get("/lookup", params={
+        'string': 'FTD',
+        'only_taxa': 'NCBITaxon:9031',
+        'biolink_type': 'biolink:Disease'
+    })
+    results_ftd_disease_with_only_taxon = response.json()
+    assert len(results_ftd_disease_with_only_taxon) == 1
+    assert results_ftd_disease_with_only_taxon[0]['curie'] == 'MONDO:0010857'