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JulianThijssenJulianThijssen
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‎.github/workflows/build.yml‎

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name: MEView
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on:
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push:
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pull_request:
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workflow_dispatch:
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env:
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# Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
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BUILD_TYPE: Release
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# for matrix check https://docs.github.com/en/actions/reference/specifications-for-github-hosted-runners
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jobs:
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prepare_matrix:
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runs-on: ubuntu-latest
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outputs:
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matrix: ${{ steps.matrix_setup.outputs.matrix }}
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steps:
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- name: Get matrix from file
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id: matrix_setup
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uses: ManiVaultStudio/github-actions/matrix_setup@main
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cross-platform-build:
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name: Cross platform build
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needs: prepare_matrix
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# The CMake configure and build commands are platform agnostic and should work equally
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# well on Windows or Mac. You can convert this to a matrix build if you need
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# cross-platform coverage.
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# See: https://docs.github.com/en/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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include: ${{ fromJson(needs.prepare_matrix.outputs.matrix) }}
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steps:
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- name: Checkout the source
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uses: actions/checkout@v4
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with:
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submodules: recursive
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ref: ${{ github.event.pull_request.head.ref }}
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- name: Select Xcode for Mac only
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if: startsWith(runner.os, 'macOS')
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run: |
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sudo xcode-select -switch /Applications/Xcode_${{matrix.build-xcode-version}}.app
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- name: Setup python version
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Start ssh key agent
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uses: webfactory/[email protected]
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with:
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ssh-private-key: ${{ secrets.RULESSUPPORT_DEPLOY_KEY }}
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- name: Install SSH deploy key for rulessupport
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uses: shimataro/ssh-key-action@v2
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with:
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key: ${{ secrets.RULESSUPPORT_DEPLOY_KEY }}
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known_hosts: github.com AAAAB3NzaC1yc2EAAAABIwAAAQEAq2A7hRGmdnm9tUDbO9IDSwBK6TbQa+PXYPCPy6rbTrTtw7PHkccKrpp0yVhp5HdEIcKr6pLlVDBfOLX9QUsyCOV0wzfjIJNlGEYsdlLJizHhbn2mUjvSAHQqZETYP81eFzLQNnPHt4EVVUh7VfDESU84KezmD5QlWpXLmvU31/yMf+Se8xhHTvKSCZIFImWwoG6mbUoWf9nzpIoaSjB+weqqUUmpaaasXVal72J+UX2B+2RPW3RcT0eOzQgqlJL3RKrTJvdsjE3JEAvGq3lGHSZXy28G3skua2SmVi/w4yCE6gbODqnTWlg7+wC604ydGXA8VJiS5ap43JXiUFFAaQ==
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- name: Windows build
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if: startsWith(runner.os, 'Windows')
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uses: ManiVaultStudio/github-actions/conan_windows_build@main
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with:
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conan-visual-version: ${{matrix.build-cversion}}
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conan-visual-runtime: ${{matrix.build-runtime}}
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conan-build-type: ${{matrix.build-config}}
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conan-user: ${{secrets.LKEB_UPLOAD_USER}}
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conan-password: ${{secrets.LKEB_UPLOAD_USER_PASSWORD}}
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conan-pem: ${{secrets.LKEB_UPLOAD_CERT_CHAIN}}
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rs_ssh_key: ${{ secrets.RULESSUPPORT_DEPLOY_KEY }}
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- name: Linux build
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if: startsWith(matrix.os, 'ubuntu')
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uses: ManiVaultStudio/github-actions/conan_linuxmac_build@main
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with:
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conan-compiler: ${{matrix.build-compiler}}
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conan-compiler-version: ${{matrix.build-cversion}}
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conan-libcxx-version: ${{matrix.build-libcxx}}
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conan-build-type: ${{matrix.build-config}}
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conan-build-os: ${{matrix.build-os}}
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build-arch: ${{matrix.build-arch}}
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conan-user: ${{secrets.LKEB_UPLOAD_USER}}
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conan-password: ${{secrets.LKEB_UPLOAD_USER_PASSWORD}}
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conan-pem: ${{secrets.LKEB_UPLOAD_CERT_CHAIN}}
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conan-cc: gcc-${{matrix.build-cversion}}
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conan-cxx: g++-${{matrix.build-cversion}}
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- name: Mac build
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if: startsWith(matrix.os, 'macos')
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uses: ManiVaultStudio/github-actions/conan_linuxmac_build@main
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with:
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conan-compiler: ${{matrix.build-compiler}}
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conan-compiler-version: ${{matrix.build-cversion}}
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conan-libcxx-version: ${{matrix.build-libcxx}}
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conan-build-type: ${{matrix.build-config}}
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conan-build-os: ${{matrix.build-os}}
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build-arch: ${{matrix.build-arch}}
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conan-user: ${{secrets.LKEB_UPLOAD_USER}}
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conan-password: ${{secrets.LKEB_UPLOAD_USER_PASSWORD}}
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conan-pem: ${{secrets.LKEB_UPLOAD_CERT_CHAIN}}

‎CMakeLists.txt‎

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@@ -22,6 +22,14 @@ endif(MSVC)
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# -----------------------------------------------------------------------------
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# Dependencies
2424
# -----------------------------------------------------------------------------
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if(NOT DEFINED MV_CMD_INSTALL_DIR)
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set(MV_CMD_INSTALL_DIR ${ManiVault_INSTALL_DIR} CACHE PATH "Directory where CellMorphologyData is installed")
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endif()
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if(NOT DEFINED MV_EPD_INSTALL_DIR)
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set(MV_EPD_INSTALL_DIR ${ManiVault_INSTALL_DIR} CACHE PATH "Directory where EphysData is installed")
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endif()
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#find_package(OpenSSL REQUIRED)
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find_package(Qt6 COMPONENTS Widgets WebEngineWidgets OpenGLWidgets REQUIRED)
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@@ -103,6 +111,8 @@ add_library(${PROJECT_NAME} SHARED ${PLUGIN_SOURCES} ${RENDER_SOURCES} ${EPHYS_S
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target_include_directories(${PROJECT_NAME} PRIVATE "${ManiVault_INCLUDE_DIR}")
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target_include_directories(${PROJECT_NAME} PRIVATE "${CMAKE_SOURCE_DIR}/src")
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#target_include_directories(${PROJECT_NAME} PRIVATE "${PROJECT_SOURCE_DIR}/3rdparty/curl/include/")
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target_include_directories(${PROJECT_NAME} PRIVATE "${MV_CMD_INSTALL_DIR}/$<CONFIGURATION>/include/")
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target_include_directories(${PROJECT_NAME} PRIVATE "${MV_EPD_INSTALL_DIR}/$<CONFIGURATION>/include/")
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# -----------------------------------------------------------------------------
@@ -129,10 +139,12 @@ target_link_libraries(${PROJECT_NAME} PRIVATE Qt6::Network)
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# to adapt the MV_LINK_PATH and PLUGIN_LINK_PATH to your install folder
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set(MV_LINK_PATH "${ManiVault_INSTALL_DIR}/$<CONFIGURATION>/lib")
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set(PLUGIN_LINK_PATH "${ManiVault_INSTALL_DIR}/$<CONFIGURATION>/$<IF:$<CXX_COMPILER_ID:MSVC>,lib,Plugins>")
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set(CMDPLUGIN_LINK_PATH "${MV_CMD_INSTALL_DIR}/$<CONFIGURATION>/$<IF:$<CXX_COMPILER_ID:MSVC>,lib,Plugins>")
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set(EPDPLUGIN_LINK_PATH "${MV_EPD_INSTALL_DIR}/$<CONFIGURATION>/$<IF:$<CXX_COMPILER_ID:MSVC>,lib,Plugins>")
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set(MV_LINK_SUFFIX $<IF:$<CXX_COMPILER_ID:MSVC>,${CMAKE_LINK_LIBRARY_SUFFIX},${CMAKE_SHARED_LIBRARY_SUFFIX}>)
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set(CELL_MORPHOLOGY_DATA_LINK_LIBRARY "${PLUGIN_LINK_PATH}/${CMAKE_SHARED_LIBRARY_PREFIX}CellMorphologyData${MV_LINK_SUFFIX}")
135-
set(EPHYS_DATA_LINK_LIBRARY "${PLUGIN_LINK_PATH}/${CMAKE_SHARED_LIBRARY_PREFIX}EphysData${MV_LINK_SUFFIX}")
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set(CELL_MORPHOLOGY_DATA_LINK_LIBRARY "${CMDPLUGIN_LINK_PATH}/${CMAKE_SHARED_LIBRARY_PREFIX}CellMorphologyData${MV_LINK_SUFFIX}")
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set(EPHYS_DATA_LINK_LIBRARY "${EPDPLUGIN_LINK_PATH}/${CMAKE_SHARED_LIBRARY_PREFIX}EphysData${MV_LINK_SUFFIX}")
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# Link to ManiVault and data plugins
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target_link_libraries(${PROJECT_NAME} PRIVATE ManiVault::Core)

‎conanfile.py‎

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from conans import ConanFile
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from conan.tools.cmake import CMakeDeps, CMake, CMakeToolchain
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from conans.tools import save, load
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import os
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import pathlib
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import subprocess
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from rules_support import PluginBranchInfo
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class MEViewConan(ConanFile):
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"""Class to package using conan
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Packages both RELEASE and RELWITHDEBINFO.
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Uses rules_support (github.com/ManiVaultStudio/rulessupport) to derive
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versioninfo based on the branch naming convention
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as described in https://github.com/ManiVaultStudio/core/wiki/Branch-naming-rules
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"""
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name = "MEView"
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description = """Viewer of cell morphology data and associated ephys traces."""
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topics = ("manivault", "plugin", "view", "morphology", "ephys")
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url = "https://github.com/ManiVaultStudio/MEView"
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author = "[email protected]" # conan recipe author
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license = "LGPL 3.0"
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short_paths = True
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generators = "CMakeDeps"
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# Options may need to change depending on the packaged library
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settings = {"os": None, "build_type": None, "compiler": None, "arch": None}
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options = {"shared": [True, False], "fPIC": [True, False]}
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default_options = {"shared": True, "fPIC": True}
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# Data plugin dependencies
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requires = ("CellMorphologyData/bican_bg@lkeb/stable", "EphysData/bican_bg@lkeb/stable")
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# Qt requirement is inherited from hdps-core
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scm = {
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"type": "git",
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"subfolder": "hdps/MEView",
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"url": "auto",
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"revision": "auto",
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}
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def __get_git_path(self):
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path = load(
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pathlib.Path(pathlib.Path(__file__).parent.resolve(), "__gitpath.txt")
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)
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print(f"git info from {path}")
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return path
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def export(self):
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print("In export")
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# save the original source path to the directory used to build the package
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save(
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pathlib.Path(self.export_folder, "__gitpath.txt"),
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str(pathlib.Path(__file__).parent.resolve()),
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)
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def set_version(self):
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# Assign a version from the branch name
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branch_info = PluginBranchInfo(self.recipe_folder)
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self.version = branch_info.version
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# print(f"Got version: {self.version}")
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def requirements(self):
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branch_info = PluginBranchInfo(self.__get_git_path())
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print(f"Core requirement {branch_info.core_requirement}")
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self.requires(branch_info.core_requirement)
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def configure(self):
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pass
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def system_requirements(self):
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# May be needed for macOS or Linux
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pass
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def config_options(self):
79+
if self.settings.os == "Windows":
80+
del self.options.fPIC
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def generate(self):
83+
generator = None
84+
if self.settings.os == "Macos":
85+
generator = "Xcode"
86+
if self.settings.os == "Linux":
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generator = "Ninja Multi-Config"
88+
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tc = CMakeToolchain(self, generator=generator)
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tc.variables["CMAKE_CXX_STANDARD_REQUIRED"] = "ON"
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# Use the Qt provided .cmake files
94+
qt_path = pathlib.Path(self.deps_cpp_info["qt"].rootpath)
95+
qt_cfg = list(qt_path.glob("**/Qt6Config.cmake"))[0]
96+
qt_dir = qt_cfg.parents[0].as_posix()
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tc.variables["Qt6_DIR"] = qt_dir
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# Use the ManiVault .cmake file to find ManiVault with find_package
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mv_core_root = self.deps_cpp_info["hdps-core"].rootpath
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manivault_dir = pathlib.Path(mv_core_root, "cmake", "mv").as_posix()
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print("ManiVault_DIR: ", manivault_dir)
104+
tc.variables["ManiVault_DIR"] = manivault_dir
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# Give the installation directory to CMake
107+
MV_CMD_PATH = pathlib.Path(self.deps_cpp_info["CellMorphologyData"].rootpath).as_posix()
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tc.variables["MV_CMD_INSTALL_DIR"] = MV_CMD_PATH
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MV_EPD_PATH = pathlib.Path(self.deps_cpp_info["EphysData"].rootpath).as_posix()
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tc.variables["MV_EPD_INSTALL_DIR"] = MV_EPD_PATH
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# Set some build options
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tc.variables["MV_UNITY_BUILD"] = "ON"
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tc.generate()
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def _configure_cmake(self):
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cmake = CMake(self)
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cmake.configure(build_script_folder="hdps/MEView")
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cmake.verbose = True
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return cmake
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def build(self):
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print("Build OS is: ", self.settings.os)
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cmake = self._configure_cmake()
128+
cmake.build(build_type="RelWithDebInfo")
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cmake.build(build_type="Release")
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def package(self):
132+
package_dir = pathlib.Path(self.build_folder, "package")
133+
relWithDebInfo_dir = package_dir / "RelWithDebInfo"
134+
release_dir = package_dir / "Release"
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print("Packaging install dir: ", package_dir)
136+
subprocess.run(
137+
[
138+
"cmake",
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"--install",
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self.build_folder,
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"--config",
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"RelWithDebInfo",
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"--prefix",
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relWithDebInfo_dir,
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]
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)
147+
subprocess.run(
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[
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"cmake",
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"--install",
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self.build_folder,
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"--config",
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"Release",
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"--prefix",
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release_dir,
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]
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)
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self.copy(pattern="*", src=package_dir)
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def package_info(self):
161+
self.cpp_info.relwithdebinfo.libdirs = ["RelWithDebInfo/lib"]
162+
self.cpp_info.relwithdebinfo.bindirs = ["RelWithDebInfo/Plugins", "RelWithDebInfo"]
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self.cpp_info.relwithdebinfo.includedirs = ["RelWithDebInfo/include", "RelWithDebInfo"]
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self.cpp_info.release.libdirs = ["Release/lib"]
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self.cpp_info.release.bindirs = ["Release/Plugins", "Release"]
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self.cpp_info.release.includedirs = ["Release/include", "Release"]

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