fix missing values in exp data

Author: Davide Laghi

JADE-RAW-RESULTS

@@ -0,0 +1 @@
+Subproject commit be16cfc8b9c2cbffc721b48497753fb87c5f652e

src/jade/post/plotter.py

@@ -6,6 +6,7 @@
 import warnings
 import matplotlib.pyplot as plt
 import numpy as np
+import logging
 
 import pandas as pd
 import seaborn as sns
@@ -542,6 +543,16 @@ def _get_figure(self) -> tuple[Figure, list[Axes]]:
                 target = df.set_index(self.cfg.x)
             val2 = target[self.cfg.y]
             err2 = target["Error"]
+            # sometimes there are index which are numerical and may have slight
+            # differences due to rounding. In reality the two must be the same
+            # in a C/E plot
+            if not val1.index.equals(val2.index):
+                # this is a dirty fix, it may miss some edge cases but they
+                # should be fairly easy to spot from the plots
+                logging.debug("Indices do not match, substituting with experiment")
+                val2.index = val1.index
+                err2.index = err1.index
+
             values, errors = compare_data(
                 val1, val2, err1, err2, comparison_type=ComparisonType.RATIO
             )

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-BKT/FNG-BKT_Al Reaction rate.csv

@@ -8,5 +8,8 @@ Cells,Value,Error
 46.85,2.94E-08,5
 53.8,1.09E-08,6
 60.55,3.71E-09,7
+67.4,,
 74.4,4.72E-10,10
 81.1,2.13E-10,15
+87.75,,
+92.15,,

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-BKT/FNG-BKT_Fe Reaction rate.csv

@@ -10,3 +10,6 @@ Cells,Value,Error
 60.55,3.67E-09,8
 67.4,1.30E-09,10.5
 74.4,4.50E-10,12
+81.1,,
+87.75,,
+92.15,,

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-BKT/FNG-BKT_In Reaction rate.csv

@@ -11,3 +11,5 @@ Cells,Value,Error
 67.4,1.61E-08,10
 74.4,7.00E-09,12
 81.1,2.51E-09,15
+87.75,,
+92.15,,

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-BKT/FNG-BKT_Mn Reaction rate.csv

@@ -11,3 +11,5 @@ Cells,Value,Error
 67.4,3.47E-07,8
 74.4,1.27E-07,10
 81.1,5.55E-08,12
+87.75,,
+92.15,,

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-BKT/FNG-BKT_Ni-n2n Reaction rate.csv

@@ -3,4 +3,13 @@ Cells,Value,Error
 10.32,4.15E-06,3.6
 17.15,9.73E-07,4
 23.95,2.57E-07,4.5
-30.8,8.18E-08,4.5
+30.8,,
+41.85,,
+46.85,,
+53.8,,
+60.55,,
+67.4,,
+74.4,,
+81.1,,
+87.75,,
+92.15,,

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-W/FNG-W_In Activation Foils.csv

@@ -1,4 +1,5 @@
 Cells,Value,Error
 5,1.38E-04,4.6
 15,1.50E-05,5.5
-25,1.67E-06,5.7
+25,1.67E-06,5.7
+35,,

tests/dummy_structure/raw_data/_exp_-_exp_/FNG-W/FNG-W_Ni-n2n Activation Foils.csv

@@ -1,4 +1,5 @@
 Cells,Value,Error
 5,1.49E-05,4
 15,8.15E-07,4.5
-25,7.19E-08,5.5
+25,7.19E-08,5.5
+35,,