Ruff formatting.

Author: knirirr

isatools/convert/isatab2json.py

@@ -142,11 +142,11 @@ def convert(self, work_dir):
 
             # validate json
             with open(join(SCHEMAS_PATH, INVESTIGATION_SCHEMA)) as json_fp:
-                #investigation_schema = json.load(json_fp)
-                #schema = DRAFT4.create_resource(investigation_schema)
-                #registry = Registry.with_resource(investigation_schema['id'], schema)
-                #validator = Draft4Validator(investigation_schema, registry=registry)
-                #validator.validate(isa_json)
+                # investigation_schema = json.load(json_fp)
+                # schema = DRAFT4.create_resource(investigation_schema)
+                # registry = Registry.with_resource(investigation_schema['id'], schema)
+                # validator = Draft4Validator(investigation_schema, registry=registry)
+                # validator.validate(isa_json)
 
                 resources = []
                 schemas_dir = Path(SCHEMAS_PATH)

isatools/isajson/validate.py

@@ -4,6 +4,7 @@
 Don't forget to read the ISA-JSON spec:
 https://isa-specs.readthedocs.io/en/latest/isajson.html
 """
+
 from __future__ import absolute_import
 
 import glob
@@ -545,7 +546,6 @@ def check_utf8(fp):
             raise SystemError()
 
 
-
 def check_isa_schemas(isa_json, investigation_schema_path):
     """Used for rule 0003 and 4003"""
     try:

tests/validators/test_validate_test_data.py

@@ -359,9 +359,11 @@ def test_validate_testdata_sampleassayplan_json(self):
                 sample_assay_plan_schema = json.load(fp)
 
                 resources = []
-                res_path = pathlib.Path(
-                    "file://", self.v2_create_schemas_path, "sample_assay_plan_schema.json"
-                ).resolve().as_uri()
+                res_path = (
+                    pathlib.Path("file://", self.v2_create_schemas_path, "sample_assay_plan_schema.json")
+                    .resolve()
+                    .as_uri()
+                )
                 schemas_dir = pathlib.Path("file://", self.v2_create_schemas_path)
                 for p in sorted(schemas_dir.glob("*.json")):
                     contents = json.loads(p.read_text(encoding="utf-8"))
@@ -374,7 +376,6 @@ def test_validate_testdata_sampleassayplan_json(self):
                 validator = Draft4Validator(schema_ref, registry=registry, format_checker=FormatChecker())
                 validator.validate(json.load(test_case_fp))
 
-
     def test_validate_testdata_sampleassayplan_qc_json(self):
         with open(os.path.join(utils.JSON_DATA_DIR, "create", "sampleassayplan_qc_test.json")) as test_case_fp:
             with open(os.path.join(self.v2_create_schemas_path, "sample_assay_plan_schema.json")) as fp: