Merge branch 'master' of https://github.com/ISA-tools/OntoMaton

Author: agbeltran

README.md

@@ -104,11 +104,16 @@ From the settings screen, you can configure:
 ###Restricting OntoMaton's search space
 
 <div align="center">
-<img src="https://isatools.files.wordpress.com/2014/04/screen-shot-2014-04-16-at-19-44-53.png?h=500"/>
+<img src="https://github.com/ISA-tools/OntoMaton/blob/master/figures/ontomaton-fig10.png" width="600">
 </div>
 
+<div align="center">
+<img src="https://github.com/ISA-tools/OntoMaton/blob/master/figures/ontomaton-fig13.png" width="600">
+</div>
+
+
 When you add a restriction using the 'Settings' panel for the first time, a 'Restrictions' sheet will be added automatically. This sheet will have the following column headers:
-```Column Name | Ontology |	 Branch | Version```. Then you may define for a particular column header in your spreadsheet what ontology should be searched (or list of ontologies, e.g. 1007, 1023).
+```Column Name | Ontology |	 Branch | Version | Ontology Name | Service```. Then you may define for a particular column header in your spreadsheet what ontology should be searched (or list of ontologies) over what service (BioPortal, OLS or LOV). A restriction will only apply if using the corresponding service for search. 
 
 Additionally, within one ontology restriction, for BioPortal searches, you can restrict to a particular branch of an ontology, providing a way to further restrict the search space.
 
@@ -117,15 +122,15 @@ An example of a google spreadsheet with such functionality can be viewed here: h
 
 ### Video Tutorial
 
-Access the video tutorial showing how to install and use OntoMaton [here](http://www.youtube.com/watch?v=Qs0nxGBfQac&feature=player_embedded).
+Access the video tutorial showing how to install and use OntoMaton (version 1) [here](http://www.youtube.com/watch?v=Qs0nxGBfQac&feature=player_embedded).
 
 ### Templates
 
 Templates can be found through accessing them on the google templates site. OntoMaton templates are [here](https://drive.google.com/templates?type=spreadsheets&q=ontomaton).
 
 ###Questions
 
-If you have any queries, please email us at [link](mailto:[email protected]). For bug reports, please use the issue page here.
+If you have any queries, please email us at [link](mailto:[email protected]). For bug reports, please [use the issue page here](https://github.com/ISA-tools/OntoMaton/issues).
 
 ###License