Update constraints.txt

Author: matentzn

constraints.txt

@@ -1,10 +1,10 @@
-airium==0.2.6
+airium==0.2.7
 alabaster==0.7.16
 annotated-types==0.7.0
 antlr4-python3-runtime==4.9.3
 anyio==4.9.0
 appdirs==1.4.4
-argon2-cffi==23.1.0
+argon2-cffi==25.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
 asteval==0.9.33
@@ -13,15 +13,15 @@ async-lru==2.0.5
 attrs==25.3.0
 babel==2.17.0
 babelon==0.3.4
-backrefs==5.8
+backrefs==5.9
 bcp47==0.1.0
 beautifulsoup4==4.13.4
 bidict==0.23.1
 bleach==6.2.0
-bmt==1.4.4
+bmt==1.4.5
 cachetools==5.5.2
-cattrs==24.1.3
-certifi==2025.4.26
+cattrs==25.1.1
+certifi==2025.6.15
 cffi==1.17.1
 CFGraph==0.2.1
 chardet==5.2.0
@@ -34,7 +34,7 @@ comm==0.2.2
 commonmark==0.9.1
 condense-json==0.1.3
 contourpy==1.3.2
-cryptography==45.0.3
+cryptography==45.0.5
 curies==0.10.19
 cycler==0.12.1
 dacite==1.9.2
@@ -55,7 +55,7 @@ distro==1.9.0
 docker==6.1.3
 docutils==0.19
 dosdp==0.1.10.dev1
-EditorConfig==0.17.0
+EditorConfig==0.17.1
 et_xmlfile==2.0.0
 eutils==0.6.0
 executing==2.2.0
@@ -64,19 +64,19 @@ fastobo==0.13.0
 filelock==3.18.0
 flexcache==0.3
 flexparser==0.4
-fonttools==4.58.0
+fonttools==4.58.5
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
-google-api-core==2.24.2
-google-api-python-client==2.170.0
-google-auth==2.40.2
+google-api-core==2.25.1
+google-api-python-client==2.175.0
+google-auth==2.40.3
 google-auth-httplib2==0.2.0
 google-auth-oauthlib==1.2.2
 googleapis-common-protos==1.70.0
-graphviz==0.20.3
-greenlet==3.2.2
+graphviz==0.21
+greenlet==3.2.3
 gspread==6.2.1
 gspread-formatting==1.2.1
 h11==0.16.0
@@ -93,14 +93,14 @@ importlib_resources==6.5.2
 inflection==0.5.1
 iniconfig==2.1.0
 ipykernel==6.29.5
-ipython==9.2.0
+ipython==9.4.0
 ipython_pygments_lexers==1.1.1
 ipywidgets==8.1.7
 isodate==0.7.2
 isoduration==20.11.0
 jaraco.classes==3.4.0
 jaraco.context==6.0.1
-jaraco.functools==4.1.0
+jaraco.functools==4.2.1
 jedi==0.19.2
 jeepney==0.9.0
 Jinja2==3.1.6
@@ -115,9 +115,9 @@ jsonasobj==1.3.1
 jsonasobj2==1.0.4
 jsonlines==4.0.0
 jsonpath-rw==1.4.0
-jsonpickle==4.1.0
+jsonpickle==4.1.1
 jsonpointer==3.0.0
-jsonschema==4.23.0
+jsonschema==4.24.0
 jsonschema-specifications==2025.4.1
 jsonschema2md==1.5.2
 jsonstreams==0.6.0
@@ -126,10 +126,10 @@ jupyter-console==6.6.3
 jupyter-events==0.12.0
 jupyter-lsp==2.2.5
 jupyter_client==8.6.3
-jupyter_core==5.8.0
+jupyter_core==5.8.1
 jupyter_server==2.16.0
 jupyter_server_terminals==0.5.3
-jupyterlab==4.4.3
+jupyterlab==4.4.4
 jupyterlab_pygments==0.3.0
 jupyterlab_server==2.27.3
 jupyterlab_widgets==3.0.15
@@ -143,9 +143,9 @@ lightrdf==0.4.0
 linkml==1.9.2
 linkml-map==0.3.8
 linkml-renderer==0.3.1
-linkml-runtime==1.9.2
-llm==0.25
-lxml==5.4.0
+linkml-runtime==1.9.3
+llm==0.26
+lxml==6.0.0
 Markdown==3.7
 markdown-it-py==3.0.0
 MarkupSafe==3.0.2
@@ -158,103 +158,103 @@ mergedeep==1.3.4
 mistune==3.1.3
 mkdocs==1.6.1
 mkdocs-get-deps==0.2.0
-mkdocs-material==9.6.14
+mkdocs-material==9.6.15
 mkdocs-material-extensions==1.3.1
 mkdocs-mermaid2-plugin==1.2.1
 mkdocs-table-reader-plugin==3.1.0
 more-click==0.1.2
 more-itertools==10.7.0
-mypy==1.15.0
+mypy==1.16.1
 mypy_extensions==1.1.0
-narwhals==1.41.0
+narwhals==1.46.0
 nbclient==0.10.2
 nbconvert==7.16.6
 nbformat==5.10.4
 ndex2==3.10.0
 neo4j==5.28.1
 nest-asyncio==1.6.0
-networkx==3.4.2
+networkx==3.5
 nh3==0.2.21
-notebook==7.4.2
+notebook==7.4.4
 notebook_shim==0.2.4
 numpy==1.26.4
-oaklib==0.6.22
-oauthlib==3.2.2
+oaklib==0.6.23
+oauthlib==3.3.1
 ols-client==0.1.4
 ontobio==2.9.12
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
-openai==1.82.0
+openai==1.93.0
 openpyxl==3.1.5
 ordered-set==4.1.0
 overrides==7.7.0
 packaging==25.0
 paginate==0.5.7
-pandas==2.2.3
+pandas==2.3.0
 pandocfilters==1.5.1
 pansql==0.0.1
 parse==1.20.2
 parso==0.8.4
 pathspec==0.12.1
 pexpect==4.9.0
-pillow==11.2.1
+pillow==11.3.0
 Pint==0.24.4
 platformdirs==4.3.8
-plotly==6.1.1
+plotly==6.2.0
 pluggy==1.6.0
 ply==3.11
 prefixcommons==0.1.12
 prefixmaps==0.2.6
 prologterms==0.0.6
-prometheus_client==0.22.0
+prometheus_client==0.22.1
 prompt_toolkit==3.0.51
 pronto==2.7.0
 proto-plus==1.26.1
-protobuf==6.31.0
+protobuf==6.31.1
 psutil==7.0.0
 ptyprocess==0.7.0
 pure_eval==0.2.3
-puremagic==1.29
+puremagic==1.30
 pyarrow==15.0.2
 pyasn1==0.6.1
 pyasn1_modules==0.4.2
 pycparser==2.22
-pydantic==2.11.5
+pydantic==2.11.7
 pydantic_core==2.33.2
 pydotplus==2.0.2
 PyGithub==2.6.1
-Pygments==2.19.1
+Pygments==2.19.2
 PyJSG==0.11.10
 PyJWT==2.10.1
-pymdown-extensions==10.15
+pymdown-extensions==10.16
 PyNaCl==1.5.0
 pyparsing==2.4.7
 pyproject-api==1.9.1
 PyShEx==0.8.1
 PyShExC==0.9.1
 pysolr==3.10.0
 pyspellchecker==0.8.3
-pystow==0.7.0
-pytest==8.3.5
+pystow==0.7.1
+pytest==8.4.1
 pytest-logging==2015.11.4
 python-dateutil==2.9.0.post0
-python-dotenv==1.1.0
+python-dotenv==1.1.1
 python-json-logger==3.3.0
 python-ulid==3.0.0
 PyTrie==0.4.0
 pytz==2025.2
 PyYAML==6.0.2
 pyyaml_env_tag==1.1
-pyzmq==26.4.0
+pyzmq==27.0.0
 ratelimit==2.2.1
 rdflib==7.1.4
 rdflib-jsonld==0.6.1
 rdflib-shim==1.0.3
 readme_renderer==43.0
 recommonmark==0.5.0
 referencing==0.36.2
-requests==2.32.3
+requests==2.32.4
 requests-cache==1.2.1
 requests-oauthlib==2.0.0
 requests-toolbelt==1.0.0
@@ -263,11 +263,11 @@ rfc3986==2.0.0
 rfc3986-validator==0.1.1
 rfc3987==1.3.8
 rich==14.0.0
-rpds-py==0.25.1
+rpds-py==0.26.0
 rsa==4.9.1
-ruamel.yaml==0.18.11
+ruamel.yaml==0.18.14
 ruamel.yaml.clib==0.2.12
-scipy==1.15.3
+scipy==1.16.0
 seaborn==0.13.2
 SecretStorage==3.3.3
 semsimian==0.2.19
@@ -306,22 +306,22 @@ terminado==0.18.1
 terminaltables==3.1.10
 tinycss2==1.4.0
 tornado==6.5.1
-tox==4.26.0
+tox==4.27.0
 tqdm==4.67.1
 traitlets==5.14.3
 tsvalid==0.0.5
 twine==6.1.0
 types-python-dateutil==2.9.0.20250516
 typing-inspect==0.9.0
 typing-inspection==0.4.1
-typing_extensions==4.13.2
+typing_extensions==4.14.1
 tzdata==2025.2
 ucumvert==0.1.2
 UpSetPlot==0.9.0
 uri-template==1.3.0
-uritemplate==4.1.1
+uritemplate==4.2.0
 url-normalize==2.2.1
-urllib3==2.4.0
+urllib3==2.5.0
 validators==0.20.0
 virtualenv==20.31.2
 watchdog==6.0.0
@@ -334,4 +334,4 @@ widgetsnbextension==4.0.14
 wrapt==1.17.2
 xmltodict==0.14.2
 yamldown==0.1.8
-zipp==3.21.0
+zipp==3.23.0