Update constraints.txt

Author: matentzn

constraints.txt

@@ -1,82 +1,82 @@
-airium==0.2.6
+airium==0.2.7
 alabaster==0.7.16
 annotated-types==0.7.0
 antlr4-python3-runtime==4.9.3
-anyio==4.9.0
+anyio==4.10.0
 appdirs==1.4.4
-argon2-cffi==23.1.0
-argon2-cffi-bindings==21.2.0
+argon2-cffi==25.1.0
+argon2-cffi-bindings==25.1.0
 arrow==1.3.0
 asteval==0.9.33
 asttokens==3.0.0
 async-lru==2.0.5
 attrs==25.3.0
 babel==2.17.0
 babelon==0.3.4
-backrefs==5.8
+backrefs==5.9
 bcp47==0.1.0
-beautifulsoup4==4.13.4
+beautifulsoup4==4.13.5
 bidict==0.23.1
 bleach==6.2.0
-bmt==1.4.4
+bmt==1.4.5
 cachetools==5.5.2
-cattrs==24.1.3
-certifi==2025.4.26
+cattrs==25.1.1
+certifi==2025.8.3
 cffi==1.17.1
 CFGraph==0.2.1
 chardet==5.2.0
-charset-normalizer==3.4.2
-class-resolver==0.6.0
+charset-normalizer==3.4.3
+class-resolver==0.7.0
 click==8.2.1
 click-default-group==1.2.4
 colorama==0.4.6
-comm==0.2.2
+comm==0.2.3
 commonmark==0.9.1
 condense-json==0.1.3
-contourpy==1.3.2
-cryptography==45.0.3
+contourpy==1.3.3
+cryptography==45.0.6
 curies==0.10.19
 cycler==0.12.1
 dacite==1.9.2
 daff==1.4.2
 dataclasses==0.6
 dataclasses-json==0.6.7
 dataclasses-jsonschema==2.16.0
-debugpy==1.8.14
+debugpy==1.8.16
 decorator==5.2.1
 deepdiff==6.7.1
 deepl==1.22.0
 defusedxml==0.7.1
 Deprecated==1.2.18
 deprecation==2.1.0
 diskcache==5.6.3
-distlib==0.3.9
+distlib==0.4.0
 distro==1.9.0
 docker==6.1.3
 docutils==0.19
 dosdp==0.1.10.dev1
-EditorConfig==0.17.0
+EditorConfig==0.17.1
 et_xmlfile==2.0.0
 eutils==0.6.0
 executing==2.2.0
-fastjsonschema==2.21.1
+fastjsonschema==2.21.2
 fastobo==0.13.0
-filelock==3.18.0
+filelock==3.19.1
 flexcache==0.3
 flexparser==0.4
-fonttools==4.58.0
+fonttools==4.59.1
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
-google-api-core==2.24.2
-google-api-python-client==2.170.0
-google-auth==2.40.2
+google-api-core==2.25.1
+google-api-python-client==2.179.0
+google-auth==2.40.3
 google-auth-httplib2==0.2.0
 google-auth-oauthlib==1.2.2
 googleapis-common-protos==1.70.0
-graphviz==0.20.3
-greenlet==3.2.2
+graphviz==0.21
+greenlet==3.2.4
 gspread==6.2.1
 gspread-formatting==1.2.1
 h11==0.16.0
@@ -92,15 +92,15 @@ importlib_metadata==8.7.0
 importlib_resources==6.5.2
 inflection==0.5.1
 iniconfig==2.1.0
-ipykernel==6.29.5
-ipython==9.2.0
+ipykernel==6.30.1
+ipython==9.4.0
 ipython_pygments_lexers==1.1.1
 ipywidgets==8.1.7
 isodate==0.7.2
 isoduration==20.11.0
 jaraco.classes==3.4.0
 jaraco.context==6.0.1
-jaraco.functools==4.1.0
+jaraco.functools==4.3.0
 jedi==0.19.2
 jeepney==0.9.0
 Jinja2==3.1.6
@@ -110,164 +110,164 @@ jiter==0.10.0
 jsbeautifier==1.15.4
 jsobject==0.10.2
 json-flattener==0.1.9
-json5==0.12.0
+json5==0.12.1
 jsonasobj==1.3.1
 jsonasobj2==1.0.4
 jsonlines==4.0.0
 jsonpath-rw==1.4.0
-jsonpickle==4.1.0
+jsonpickle==4.1.1
 jsonpointer==3.0.0
-jsonschema==4.23.0
+jsonschema==4.25.1
 jsonschema-specifications==2025.4.1
-jsonschema2md==1.5.2
+jsonschema2md==1.7.0
 jsonstreams==0.6.0
 jupyter==1.1.1
 jupyter-console==6.6.3
 jupyter-events==0.12.0
-jupyter-lsp==2.2.5
+jupyter-lsp==2.2.6
 jupyter_client==8.6.3
-jupyter_core==5.8.0
-jupyter_server==2.16.0
+jupyter_core==5.8.1
+jupyter_server==2.17.0
 jupyter_server_terminals==0.5.3
-jupyterlab==4.4.3
+jupyterlab==4.4.6
 jupyterlab_pygments==0.3.0
 jupyterlab_server==2.27.3
 jupyterlab_widgets==3.0.15
 keyring==25.6.0
 kgcl-rdflib==0.5.0
 kgcl_schema==0.6.9
 kgx==2.5.1
-kiwisolver==1.4.8
+kiwisolver==1.4.9
 lark==1.2.2
 lightrdf==0.4.0
-linkml==1.9.2
+linkml==1.9.3
 linkml-map==0.3.8
 linkml-renderer==0.3.1
-linkml-runtime==1.9.2
-llm==0.25
-lxml==5.4.0
-Markdown==3.7
-markdown-it-py==3.0.0
+linkml-runtime==1.9.5
+llm==0.27.1
+lxml==6.0.1
+Markdown==3.8.2
+markdown-it-py==4.0.0
 MarkupSafe==3.0.2
 marshmallow==3.26.1
-matplotlib==3.10.3
+matplotlib==3.10.5
 matplotlib-inline==0.1.7
 matplotlib-venn==1.1.2
 mdurl==0.1.2
 mergedeep==1.3.4
 mistune==3.1.3
 mkdocs==1.6.1
 mkdocs-get-deps==0.2.0
-mkdocs-material==9.6.14
+mkdocs-material==9.6.18
 mkdocs-material-extensions==1.3.1
 mkdocs-mermaid2-plugin==1.2.1
 mkdocs-table-reader-plugin==3.1.0
 more-click==0.1.2
 more-itertools==10.7.0
-mypy==1.15.0
+mypy==1.17.1
 mypy_extensions==1.1.0
-narwhals==1.41.0
+narwhals==2.2.0
 nbclient==0.10.2
 nbconvert==7.16.6
 nbformat==5.10.4
-ndex2==3.10.0
-neo4j==5.28.1
+ndex2==3.11.0
+neo4j==5.28.2
 nest-asyncio==1.6.0
-networkx==3.4.2
-nh3==0.2.21
-notebook==7.4.2
+networkx==3.5
+nh3==0.3.0
+notebook==7.4.5
 notebook_shim==0.2.4
 numpy==1.26.4
-oaklib==0.6.22
-oauthlib==3.2.2
-ols-client==0.1.4
+oaklib==0.6.23
+oauthlib==3.3.1
+ols-client==0.2.1
 ontobio==2.9.12
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
-openai==1.82.0
+openai==1.101.0
 openpyxl==3.1.5
 ordered-set==4.1.0
-overrides==7.7.0
 packaging==25.0
 paginate==0.5.7
-pandas==2.2.3
+pandas==2.3.2
 pandocfilters==1.5.1
 pansql==0.0.1
 parse==1.20.2
-parso==0.8.4
+parso==0.8.5
 pathspec==0.12.1
 pexpect==4.9.0
-pillow==11.2.1
-Pint==0.24.4
+pillow==11.3.0
+Pint==0.25
 platformdirs==4.3.8
-plotly==6.1.1
+plotly==6.3.0
 pluggy==1.6.0
 ply==3.11
 prefixcommons==0.1.12
 prefixmaps==0.2.6
 prologterms==0.0.6
-prometheus_client==0.22.0
+prometheus_client==0.22.1
 prompt_toolkit==3.0.51
 pronto==2.7.0
 proto-plus==1.26.1
-protobuf==6.31.0
+protobuf==6.32.0
 psutil==7.0.0
 ptyprocess==0.7.0
 pure_eval==0.2.3
-puremagic==1.29
+puremagic==1.30
 pyarrow==15.0.2
 pyasn1==0.6.1
 pyasn1_modules==0.4.2
 pycparser==2.22
-pydantic==2.11.5
+pydantic==2.11.7
 pydantic_core==2.33.2
 pydotplus==2.0.2
-PyGithub==2.6.1
-Pygments==2.19.1
+PyGithub==2.7.0
+Pygments==2.19.2
 PyJSG==0.11.10
 PyJWT==2.10.1
-pymdown-extensions==10.15
+pymdown-extensions==10.16.1
 PyNaCl==1.5.0
 pyparsing==2.4.7
 pyproject-api==1.9.1
 PyShEx==0.8.1
 PyShExC==0.9.1
 pysolr==3.10.0
 pyspellchecker==0.8.3
-pystow==0.7.0
-pytest==8.3.5
+pystow==0.7.7
+pytest==8.4.1
 pytest-logging==2015.11.4
 python-dateutil==2.9.0.post0
-python-dotenv==1.1.0
+python-dotenv==1.1.1
 python-json-logger==3.3.0
-python-ulid==3.0.0
+python-ulid==3.1.0
 PyTrie==0.4.0
 pytz==2025.2
 PyYAML==6.0.2
 pyyaml_env_tag==1.1
-pyzmq==26.4.0
+pyzmq==27.0.2
 ratelimit==2.2.1
 rdflib==7.1.4
 rdflib-jsonld==0.6.1
 rdflib-shim==1.0.3
 readme_renderer==43.0
 recommonmark==0.5.0
 referencing==0.36.2
-requests==2.32.3
+requests==2.32.5
 requests-cache==1.2.1
 requests-oauthlib==2.0.0
 requests-toolbelt==1.0.0
 rfc3339-validator==0.1.4
 rfc3986==2.0.0
 rfc3986-validator==0.1.1
 rfc3987==1.3.8
-rich==14.0.0
-rpds-py==0.25.1
+rfc3987-syntax==1.1.0
+rich==14.1.0
+rpds-py==0.27.0
 rsa==4.9.1
-ruamel.yaml==0.18.11
+ruamel.yaml==0.18.15
 ruamel.yaml.clib==0.2.12
-scipy==1.15.3
+scipy==1.16.1
 seaborn==0.13.2
 SecretStorage==3.3.3
 semsimian==0.2.19
@@ -290,7 +290,7 @@ sphinxcontrib-htmlhelp==2.1.0
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==2.0.0
 sphinxcontrib-serializinghtml==2.0.0
-SQLAlchemy==2.0.41
+SQLAlchemy==2.0.43
 SQLAlchemy-Utils==0.38.3
 sqlite-fts4==1.0.3
 sqlite-migrate==0.1b0
@@ -305,33 +305,33 @@ termcolor==3.1.0
 terminado==0.18.1
 terminaltables==3.1.10
 tinycss2==1.4.0
-tornado==6.5.1
-tox==4.26.0
+tornado==6.5.2
+tox==4.27.0
 tqdm==4.67.1
 traitlets==5.14.3
 tsvalid==0.0.5
 twine==6.1.0
-types-python-dateutil==2.9.0.20250516
+types-python-dateutil==2.9.0.20250822
 typing-inspect==0.9.0
 typing-inspection==0.4.1
-typing_extensions==4.13.2
+typing_extensions==4.14.1
 tzdata==2025.2
 ucumvert==0.1.2
 UpSetPlot==0.9.0
 uri-template==1.3.0
-uritemplate==4.1.1
+uritemplate==4.2.0
 url-normalize==2.2.1
-urllib3==2.4.0
+urllib3==2.5.0
 validators==0.20.0
-virtualenv==20.31.2
+virtualenv==20.34.0
 watchdog==6.0.0
 wcwidth==0.2.13
 webcolors==24.11.1
 webencodings==0.5.1
 websocket-client==1.8.0
 wheel==0.42.0
 widgetsnbextension==4.0.14
-wrapt==1.17.2
+wrapt==1.17.3
 xmltodict==0.14.2
 yamldown==0.1.8
-zipp==3.21.0
+zipp==3.23.0