Merge pull request #529 from GoekeLab/update_github_actions_v4

update github actions to check push and PR to devel_pre and devel_pre_v4 for v4

Author: cying111

.github/workflows/check-bioc.yml

@@ -22,9 +22,9 @@
 
 on:
   push:
-    branches: [main, devel]
+    branches: [devel, devel_pre, devel_pre_v4]
   pull_request:
-    branches: [main, devel]
+    branches: [devel, devel_pre, devel_pre_v4]
 
 name: R-CMD-check-bioc
 
@@ -54,8 +54,8 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - { os: ubuntu-latest, r: '4.4.2', bioc: '3.20', cont: "bioconductor/bioconductor_docker:RELEASE_3_20", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
-          - { os: macOS-latest, r: '4.4.2', bioc: '3.20'}
+          - { os: ubuntu-latest, r: '4.5.2', bioc: '3.22', cont: "bioconductor/bioconductor_docker:RELEASE_3_22", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
+          - { os: macOS-latest, r: '4.5.2', bioc: '3.22'}
           ## - { os: windows-latest, r: '4.4', bioc: '3.20'}
           ## Check https://github.com/r-lib/actions/tree/master/examples
           ## for examples using the http-user-agent
@@ -107,16 +107,16 @@ jobs:
         uses: actions/cache@v4
         with:
           path: ${{ env.R_LIBS_USER }}
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE-r-4.4.2-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE-r-4.4.2-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE-r-4.5.2-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE-r-4.5.2-
 
       - name: Cache R packages on Linux
         if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' "
         uses: actions/cache@v4
         with:
           path: /home/runner/work/_temp/Library
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.4.2-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.4.2-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.5.2-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.5.2-
 
       - name: Install Linux system dependencies
         if: runner.os == 'Linux'
@@ -339,7 +339,7 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@v4
         with:
-          name: ${{ runner.os }}-biocversion-RELEASE-r-4.4.2-results
+          name: ${{ runner.os }}-biocversion-RELEASE-r-4.5.2-results
           path: check
 
       - uses: docker/build-push-action@v1

.github/workflows/lint.yaml

@@ -2,10 +2,10 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: 
-      - devel
+    branches: [devel, devel_pre, devel_pre_v4]
+    
   pull_request:
-    branches: [main, devel]
+    branches: [devel, devel_pre, devel_pre_v4]
 
 name: lint
 

.github/workflows/test-coverage.yaml

@@ -2,10 +2,10 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: 
-      - devel
+    branches: [devel, devel_pre, devel_pre_v4]
+
   pull_request:
-    branches: [main, devel]
+    branches: [devel, devel_pre, devel_pre_v4]
 
 name: test-coverage