updating timeline with mice and CDC pre-print and adding new timeline image

Author: scarpino

Timeline Data/H5N1 US Timeline 2024.csv

@@ -44,11 +44,11 @@ Date,Event,Link,https://github.com/Emergent-Epidemics/H5N1_US2024_timeline,Num,L
 2024-04-15,"USDA confirms 9 positive commercial poultry farms positive for HPAI in seven states since Mar 2024 (Michigan (2), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (1), New Mexico (2), and Kansas (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,42,https://www.aphis.usda.gov/news/agency-announcements/usda-awards-222-million-farm-bill-funding-protect-animal-health
 2024-04-16,"9 viral genomes from felines posted publicly with collection dates: Mar 16th (2), Mar 20th (5), Mar 22nd (2)",https://gisaid.org/,,,https://www.cdc.gov/mmwr/volumes/73/wr/mm7321e1.htm
 2024-04-16,"USDA confirms 10 positive commercial poultry farms positive for HPAI in seven states since Mar 2024 (Michigan (3), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (1), New Mexico (2), and Kansas (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,,https://www.aphis.usda.gov/sites/default/files/guidance-dairy-cattle-livestock-exhibition.pdf
-2024-04-17,"USDA confirms 34 positive dairy farms in eight states (Texas (12), Kansas (4), New Mexico (8), Idaho (1), Michigan (6), South Dakota (1), North Carolina (1), and Ohio (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,https://www.aphis.usda.gov/sites/default/files/hpai-ppe-recommendations.pdf
-2024-04-17,"USDA confirms 12 positive commercial poultry farms positive for HPAI in seven states since Mar 2024 (Michigan (4), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (1), New Mexico (3), and Kansas (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,,https://www.cdc.gov/media/releases/2024/p0530-h5-human-case-michigan.html
-2024-04-18,2 viral genomes from felines posted publicly with collection dates: Mar 20th (2),https://gisaid.org/,,,https://www.medrxiv.org/content/10.1101/2024.05.30.24308212v1
-2024-04-19,"USDA confirms 35 positive dairy farms in eight states (Texas (12), Kansas (4), New Mexico (8), Idaho (2), Michigan (6), South Dakota (1), North Carolina (1), and Ohio (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,https://www.cidrap.umn.edu/avian-influenza-bird-flu/h5-influenza-wastewater-dashboard-launches
-2024-04-21,USDA posts 239 additional H5N1 genomes from birds and dairy cattle,https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/usda-publishes-h5n1-influenza-virus-genetic,,,
+2024-04-17,"USDA confirms 34 positive dairy farms in eight states (Texas (12), Kansas (4), New Mexico (8), Idaho (1), Michigan (6), South Dakota (1), North Carolina (1), and Ohio (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/mammals
+2024-04-17,"USDA confirms 12 positive commercial poultry farms positive for HPAI in seven states since Mar 2024 (Michigan (4), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (1), New Mexico (3), and Kansas (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,,https://www.aphis.usda.gov/sites/default/files/hpai-ppe-recommendations.pdf
+2024-04-18,2 viral genomes from felines posted publicly with collection dates: Mar 20th (2),https://gisaid.org/,,,https://www.cdc.gov/media/releases/2024/p0530-h5-human-case-michigan.html
+2024-04-19,"USDA confirms 35 positive dairy farms in eight states (Texas (12), Kansas (4), New Mexico (8), Idaho (2), Michigan (6), South Dakota (1), North Carolina (1), and Ohio (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,https://www.medrxiv.org/content/10.1101/2024.05.30.24308212v1
+2024-04-21,USDA posts 239 additional H5N1 genomes from birds and dairy cattle,https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/usda-publishes-h5n1-influenza-virus-genetic,,,https://www.cidrap.umn.edu/avian-influenza-bird-flu/h5-influenza-wastewater-dashboard-launches
 2024-04-23,Analysis of 239 additional genomes suggests cow-to-cow transmission,https://x.com/MichaelWorobey/status/1782880126042271931,,,
 2024-04-23,Analysis of 239 additional genomes suggests a single origin for the ongoing dairy cattle outbreak,https://x.com/MichaelWorobey/status/1782756133402509587,,,
 2024-04-24,"USDA confirms 13 positive commercial poultry farms positive for HPAI in seven states since Mar 2024 (Michigan (5), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (1), New Mexico (3), and Kansas (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,,
@@ -115,12 +115,14 @@ Date,Event,Link,https://github.com/Emergent-Epidemics/H5N1_US2024_timeline,Num,L
 2024-05-24,An H5N1 virus genomes collected from the second reported human case was posted publicly. It was collected on May 14th/,https://gisaid.org/,,,
 2024-05-24,"USDA confirms 67 positive dairy farms in nine states (Colorado (4), Idaho (10), Kansas (4), Michigan (20), New Mexico (8), North Carolina (1), Ohio (1), South Dakota (4), Texas (15))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,
 2024-05-24,16 H5N1 genomes collected from dairy cows were posted to GISAID. Collection dates: Apr 5th (16),https://gisaid.org/,,,
+2024-05-24,House mice in NM test positive for H5N1. This is the first detection of H5N1 in this species. Samples were collected in early May 2024.,https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/mammals,,,
 2024-05-25,An H5N1 virus was collected from the third reported human case and was sequenced. The sequence was posted on June 3rd,https://gisaid.org/,,,
 2024-05-26,"WastewaterSCAN confirms 2 sites out of 194 in the US were positive for H5: Jackson, MI,  Marshalltown, IA ",https://data.wastewaterscan.org/,,,
 2024-05-27,"WastewaterSCAN confirms 3 sites out of 194 in the US were positive for H5: Dallas, TX,  Jenison, MI,   Warren, MI ",https://data.wastewaterscan.org/,,,
 2024-05-28,"USDA confirms 24 positive commercial poultry farms positive for HPAI in nine states since Mar 2024 (Michigan (7), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (7), New Mexico (3), Kansas (1), Idaho (2), Iowa (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,,
 2024-05-28,"USDA confirms 69 positive dairy farms in nine states (Colorado (4), Idaho (10), Kansas (4), Michigan (22), New Mexico (8), North Carolina (1), Ohio (1), South Dakota (4), Texas (15))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,
 2024-05-28,"WastewaterSCAN confirms 1 site out of 194 in the US were positive for H5: Dallas, TX ",https://data.wastewaterscan.org/,,,
+2024-05-28,"The US CDC confirms cow-to-cow transmission, symptoms in infected dairy cows, and that cats drinking raw cow milk with H5N1 develop fatal symptoms.",https://wwwnc.cdc.gov/eid/article/30/7/24-0508_article,,,
 2024-05-29,"USDA confirms 25 positive commercial poultry farms positive for HPAI in nine states since Mar 2024 (Michigan (7), Texas (1), South Dakota (1), Massachusetts (1), Minnesota (8), New Mexico (3), Kansas (1), Idaho (2), Iowa (1))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/commercial-backyard-flocks,,,
 2024-05-29,"USDA confirms 70 positive dairy farms in nine states (Colorado (4), Idaho (10), Kansas (4), Michigan (23), New Mexico (8), North Carolina (1), Ohio (1), South Dakota (4), Texas (15))",https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock,,,
 2024-05-29,USDA updates guidlines on personal protective equipment for livestock workers.,https://www.aphis.usda.gov/sites/default/files/hpai-ppe-recommendations.pdf,,,