sqlalchemy version incompatibility with ms2pip

[lliligabriel]

Greetings! I noticed that your team recently updated psm-utils, thanks:) I think it resolves an error I encountered when running ms2rescore (specifically in the mokapot phase).

However, I think this version also requires sqlalchemy>=2.0, whereas mspip requires sqlalchemy <2.0.

I can resolve this, if i remember correctly, by updating ms2rescore + keeping the updated psm-utils + manually installing cbor (which your team has fixed the lazy import), but I do not think it is that straightforward.

Thank you so much!:)

[RalfG]

Hi @lliligabriel,

Thank you for letting us know! I have updated MS²PIP to be compatible with sqlalchemy v2 (see #249). We should be able to release the updates soon.

Best,
Ralf