BioTutorials
These are still a work in progress
@@ -44,7 +44,7 @@ hero:Automa.jl Files
Efficient state-machine generation to quickly and correctly parse bespoke file formats
@@ -62,7 +62,7 @@ hero:BioAlignments.jl Bioinformatics
Sequence alignment algorithms and data structures
@@ -107,7 +107,7 @@ hero:BioGenerics.jl Other
Generic interface definitions for BioJulia packages
@@ -116,7 +116,7 @@ hero:BioMakie.jl Bioinformatics
Visualize sequences and 3D proteins with ease
@@ -125,7 +125,7 @@ hero:BioMarkovChains.jl Bioinformatics
Markov chain models for biological sequences
@@ -134,7 +134,7 @@ hero:BioSequences.jl Bioinformatics
Optimized types for working with biological sequences (eg DNA, RNA, proteins)
@@ -143,7 +143,7 @@ hero:BioServices.jl Other
Interface to biological web services and databases
@@ -152,7 +152,7 @@ hero:BioStructures.jl Bioinformatics
Read, write, and manipulate macromolecular structures (PDB, mmCIF)
@@ -161,7 +161,7 @@ hero:BioSymbols.jl Bioinformatics
Primitive types for nucleotides and amino acids
@@ -170,7 +170,7 @@ hero:CIGARStrings.jl Bioinformatics
Parse and manipulate CIGAR strings for sequence alignments
@@ -188,7 +188,7 @@ hero:GeneticVariation.jl Bioinformatics
Types and methods for working with genetic variation data
@@ -223,7 +223,7 @@ hero:GenomicAnnotations.jl Bioinformatics
Read and write genomic annotations (GFF3, GenBank, EMBL)
@@ -232,7 +232,7 @@ hero:GenomicFeatures.jl Bioinformatics
Genomic interval operations and data structures
@@ -241,7 +241,7 @@ hero:GraphicalFragmentAssembly.jl Files
Read and write GFA format for sequence graphs
@@ -259,7 +259,7 @@ hero:NCBIBlast.jl Bioinformatics
Interface to NCBI BLAST+ for sequence similarity searches
@@ -330,7 +330,7 @@ hero:OpenMendel Outside Org
Statistical genetics and genomic analysis tools
@@ -338,7 +338,7 @@ hero:PopGenCore.jl Bioinformatics
Core types and functions for population genetics
@@ -365,7 +365,7 @@ hero:ProteinSecondaryStructures.jl Bioinformatics
Analyze and predict protein secondary structures
@@ -374,7 +374,7 @@ hero:ReadDatastores.jl Bioinformatics
Efficient storage and access for sequencing read data
@@ -383,7 +383,7 @@ hero:SequenceVariation.jl Bioinformatics
Represent and manipulate sequence variations (mutations, variants)
@@ -392,7 +392,7 @@ hero:SingleCellProjections.jl Bioinformatics
More cells? No Problem! Get UMAPs and other projections of your single cell data using the power of Sparse Matrices
@@ -401,7 +401,7 @@ hero:SubstitutionModels.jl Bioinformatics
Nucleotide and amino acid substitution models for phylogenetics
@@ -410,7 +410,7 @@ hero:WaveletMatrices.jl Other
Wavelet matrix data structure for fast queries
@@ -419,7 +419,7 @@ hero: