BioTutorials
These are still a work in progress
@@ -44,15 +44,15 @@ hero:Automa.jl Files
Efficient state-machine generation to quickly and correctly parse bespoke file formats
@@ -60,7 +60,7 @@ hero:BioAlignments.jl Bioinformatics
Sequence alignment algorithms and data structures
@@ -100,7 +100,7 @@ hero:BioGenerics.jl Other
Generic interface definitions for BioJulia packages
@@ -108,7 +108,7 @@ hero:BioMakie.jl Bioinformatics
Visualize sequences and 3D proteins with ease
@@ -116,7 +116,7 @@ hero:BioMarkovChains.jl Bioinformatics
Markov chain models for biological sequences
@@ -124,7 +124,7 @@ hero:BioSequences.jl Bioinformatics
Optimized types for working with biological sequences (eg DNA, RNA, proteins)
@@ -132,7 +132,7 @@ hero:BioServices.jl Other
Interface to biological web services and databases
@@ -140,7 +140,7 @@ hero:BioStructures.jl Bioinformatics
Read, write, and manipulate macromolecular structures (PDB, mmCIF)
@@ -148,7 +148,7 @@ hero:BioSymbols.jl Bioinformatics
Primitive types for nucleotides and amino acids
@@ -156,7 +156,7 @@ hero:CIGARStrings.jl Bioinformatics
Parse and manipulate CIGAR strings for sequence alignments
@@ -180,7 +180,7 @@ hero:GeneticVariation.jl Bioinformatics
Types and methods for working with genetic variation data
@@ -204,7 +204,7 @@ hero:GenomicAnnotations.jl Bioinformatics
Read and write genomic annotations (GFF3, GenBank, EMBL)
@@ -212,7 +212,7 @@ hero:GenomicFeatures.jl Bioinformatics
Genomic interval operations and data structures
@@ -220,7 +220,7 @@ hero:GraphicalFragmentAssembly.jl Files
Read and write GFA format for sequence graphs
@@ -236,7 +236,7 @@ hero:NCBIBlast.jl Bioinformatics
Interface to NCBI BLAST+ for sequence similarity searches
@@ -308,7 +308,7 @@ hero:PopGenCore.jl Bioinformatics
Core types and functions for population genetics
@@ -332,7 +332,7 @@ hero:ProteinSecondaryStructures.jl Bioinformatics
Analyze and predict protein secondary structures
@@ -340,7 +340,7 @@ hero:ReadDatastores.jl Bioinformatics
Efficient storage and access for sequencing read data
@@ -348,7 +348,7 @@ hero:SequenceVariation.jl Bioinformatics
Represent and manipulate sequence variations (mutations, variants)
@@ -356,7 +356,7 @@ hero:SingleCellProjections.jl Bioinformatics
More cells? No Problem! Get UMAPs and other projections of your single cell data using the power of Sparse Matrices
@@ -364,7 +364,7 @@ hero:SubstitutionModels.jl Bioinformatics
Nucleotide and amino acid substitution models for phylogenetics
@@ -372,7 +372,7 @@ hero: