This is technically an issue in the Factorio AP generator, but because it's caused by use of the extractor and is not a problem with vanilla I'm putting it here to hopefully save confusion.
After creating a world with the Rampant Arsenal mod added to the factorio.apworld file (I've removed all tech that fails due to issue #3), the created mod file causes the Factorio server to crash on boot with the following error.
0.679 Error ServerMultiplayerManager.cpp:92: MultiplayerManager failed: "__AP-54315640605228902228-P1-Skid__/control.lua:118: syntax error near '-'"
The error is on the following line:
force.technologies.rampant-arsenal-technology-high-explosives.researched = true
Changing the control.lua file so that this lines and the ones near it read as follows, fixes the problem.
force.technologies['rampant-arsenal-technology-high-explosives'].researched = true