Upgrade to v0.0.31

Author: mdbarnesUCSD

setup.py

@@ -2,57 +2,65 @@
 import shutil
 import os
 
-#remove the dist folder first if exists
+# remove the dist folder first if exists
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = '0.0.30'
+VERSION = "0.0.31"
 
 
-def write_version_py(filename='SigProfilerAssignment/version.py'):
+def write_version_py(filename="SigProfilerAssignment/version.py"):
     # Copied from numpy setup.py
     cnt = """
 # THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v0.0.30: Sample reconstruction plot fix and pandas version fix.'
+Update = 'v0.0.31: Resolve issue with export probability per mutation for exome data'
 
     
     """
-    fh = open(filename, 'w')
-    fh.write(cnt % {'version': VERSION,})
+    fh = open(filename, "w")
+    fh.write(
+        cnt
+        % {
+            "version": VERSION,
+        }
+    )
     fh.close()
 
-with open('README.md') as f:
-	long_description = f.read()
-
-requirements=[
-          'scipy>=1.6.3',
-          'numpy>=1.21.2',
-          'pandas>=1.2.4,<2.0.0',
-          'SigProfilerMatrixGenerator>=1.2.14', 
-          'sigProfilerPlotting>=1.3.11',
-          'statsmodels>=0.9.0',
-          'scikit-learn>=0.24.2',
-          'psutil>=5.6.1',
-          'reportlab>=3.5.42',
-          'PyPDF2>=3.0.0',
-          'alive_progress>=2.4.1',
-          'pdf2image>=1.16.0',
-          'PyMuPDF>=1.21.0'
-           ]
-
-write_version_py() 
-setup(name='SigProfilerAssignment',
-      version=VERSION,
-      description='Mutational signatures attribution and decomposition tool',
-      long_description=long_description,
-      long_description_content_type='text/markdown',  # This is important!	
-      url="https://github.com/AlexandrovLab/SigProfilerAssignment.git",
-      author='Raviteja Vangara',
-      author_email='[email protected]',
-      license='UCSD',
-      packages=['SigProfilerAssignment'],
-      install_requires=requirements,
-      include_package_data=True,      
-      zip_safe=False)
+
+with open("README.md") as f:
+    long_description = f.read()
+
+requirements = [
+    "scipy>=1.6.3",
+    "numpy>=1.21.2",
+    "pandas>=1.2.4,<2.0.0",
+    "SigProfilerMatrixGenerator>=1.2.14",
+    "sigProfilerPlotting>=1.3.11",
+    "statsmodels>=0.9.0",
+    "scikit-learn>=0.24.2",
+    "psutil>=5.6.1",
+    "reportlab>=3.5.42",
+    "PyPDF2>=3.0.0",
+    "alive_progress>=2.4.1",
+    "pdf2image>=1.16.0",
+    "PyMuPDF>=1.21.0",
+]
+
+write_version_py()
+setup(
+    name="SigProfilerAssignment",
+    version=VERSION,
+    description="Mutational signatures attribution and decomposition tool",
+    long_description=long_description,
+    long_description_content_type="text/markdown",  # This is important!
+    url="https://github.com/AlexandrovLab/SigProfilerAssignment.git",
+    author="Raviteja Vangara",
+    author_email="[email protected]",
+    license="UCSD",
+    packages=["SigProfilerAssignment"],
+    install_requires=requirements,
+    include_package_data=True,
+    zip_safe=False,
+)