v0.1.9: PdfMerger deprecation fix

Author: mdbarnesUCSD

.travis.yml

@@ -11,9 +11,8 @@ cache:
     - master
 
 before_install:
-  if ! [ -f ./src/GRCh37.tar.gz ]; then
-    wget ftp://alexandrovlab-ftp.ucsd.edu/pub/tools/SigProfilerMatrixGenerator/GRCh37.tar.gz -P ./src/;
-  fi
+  - pip install --upgrade pip setuptools packaging
+  - if ! [ -f ./src/GRCh37.tar.gz ]; then wget ftp://alexandrovlab-ftp.ucsd.edu/pub/tools/SigProfilerMatrixGenerator/GRCh37.tar.gz -P ./src/; fi
 
 install:
   - pip install .[tests]

CHANGELOG.md

@@ -6,6 +6,14 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 
 ## [Unreleased]
 
+## [0.1.9] - 2024-11-12
+
+### Changed
+- Replaced `PdfMerger` with `PdfWriter` due to deprecation in `pypdf >= 5.0.0`.
+
+### Fixed
+- Addressed deprecation issues with `PdfMerger`, ensuring compatibility with recent `pypdf` versions.
+
 ## [0.1.8] - 2024-08-20
 
 ### Added

setup.py

@@ -6,7 +6,7 @@
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = "0.1.8"
+VERSION = "0.1.9"
 
 
 def write_version_py(filename="SigProfilerAssignment/version.py"):
@@ -15,7 +15,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
 # THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v0.1.8: Add Dockerfile and remove uncessary dependencies'
+Update = 'v0.1.9: Replace PdfMerger with PdfReader and PdfWriter for pypdf 5.0.0'
 
     
     """