Merge pull request #101 from AlexandrovLab/i99

I99

Author: mdbarnesUCSD

.travis.yml

@@ -4,6 +4,12 @@ language: python
 python:
   - '3.8'
 
+cache:
+  directories:
+    - $TRAVIS_BUILD_DIR/src/
+  branch:
+    - master
+
 before_install:
   if ! [ -f ./src/GRCh37.tar.gz ]; then
     wget ftp://alexandrovlab-ftp.ucsd.edu/pub/tools/SigProfilerMatrixGenerator/GRCh37.tar.gz -P ./src/;
@@ -12,10 +18,6 @@ before_install:
 install:
   - pip install .
 
-cache:
-  directories:
-    - $TRAVIS_BUILD_DIR/src/
-
 before_script:
   - python3 install_genome.py $TRAVIS_BUILD_DIR/src/
 

SigProfilerAssignment/decompose_subroutines.py

@@ -764,6 +764,8 @@ def make_final_solution(processAvg, allgenomes, allsigids, layer_directory, m, i
             plot.plotSBS(layer_directory+"/Signatures/"+solution_prefix+"_"+"Signatures.txt", layer_directory+"/Signatures/", solution_prefix, m, True, custom_text_upper= signature_stabilities, custom_text_middle = signature_total_mutations )
         elif m=="288":
             plot.plotSBS(layer_directory+"/Signatures/"+solution_prefix+"_"+"Signatures.txt", layer_directory+"/Signatures/", solution_prefix, m, True, custom_text_upper= signature_stabilities, custom_text_middle = signature_total_mutations )
+        elif m=="384":
+            plot.plotSBS(layer_directory+"/Signatures/"+solution_prefix+"_"+"Signatures.txt", layer_directory+"/Signatures/", solution_prefix, m, True, custom_text_upper= signature_stabilities, custom_text_middle = signature_total_mutations )
         elif m=="1536":
             plot.plotSBS(layer_directory+"/Signatures/"+solution_prefix+"_"+"Signatures.txt", layer_directory+"/Signatures/", solution_prefix, m, True, custom_text_upper= signature_stabilities, custom_text_middle = signature_total_mutations )
         elif m=="4608":

setup.py

@@ -6,7 +6,7 @@
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = "0.0.32"
+VERSION = "0.0.33"
 
 
 def write_version_py(filename="SigProfilerAssignment/version.py"):
@@ -15,7 +15,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
 # THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v0.0.32: Resolve with SBS4608 plots showing up as custom plots.'
+Update = 'v0.0.33: Resolve with SBS384 plots showing up as custom plots.'
 
     
     """