Merge pull request #115 from AlexandrovLab/u_ndarray

v0.1.3: Modify how ndarrays are processed

Author: mdbarnesUCSD

SigProfilerAssignment/decomposition.py

@@ -296,7 +296,6 @@ def spa_analyze(
             genomes = pd.read_csv(samples, sep="\t", index_col=0)
         except:
             genomes = samples
-            genomes = pd.DataFrame(genomes)
     else:
         sys.exit("Invalid input_type specified")
 

setup.py

@@ -6,7 +6,7 @@
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = "0.1.2"
+VERSION = "0.1.3"
 
 
 def write_version_py(filename="SigProfilerAssignment/version.py"):
@@ -15,7 +15,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
 # THIS FILE IS GENERATED FROM SigProfilerAssignment SETUP.PY
 short_version = '%(version)s'
 version = '%(version)s'
-Update = 'v0.1.2: Add matrix input format processing'
+Update = 'v0.1.3: Modify how ndarrays are processed'
 
     
     """
@@ -37,7 +37,7 @@ def write_version_py(filename="SigProfilerAssignment/version.py"):
     "numpy>=1.21.2",
     "pandas>=1.2.4,<2.0.0",
     "SigProfilerMatrixGenerator>=1.2.17",
-    "sigProfilerPlotting>=1.3.18",
+    "sigProfilerPlotting>=1.3.20",
     "statsmodels>=0.9.0",
     "scikit-learn>=0.24.2",
     "psutil>=5.6.1",