v0.0.2: updated packaging and distribution (#9)

- Added pyproject.toml for build configuration
- Added .gitignore to exclude unnecessary files
- Added CHANGELOG.md for version history tracking
- Updated setup.py:
  - Set Python requirement to >= 3.9
  - Updated SigProfilerPlotting requirement to >= 1.4.1
  - Updated SigProfilerMatrixGenerator requirement to >= 1.3.5

Author: ammalabbasi

.gitignore

@@ -0,0 +1,21 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# Distribution / packaging
+build/
+dist/
+*.egg-info/
+.eggs/
+*.whl
+
+# macOS
+*.DS_Store
+
+# IDE / editor settings
+.vscode/
+.idea/
+
+# Test / example output
+HRProfiler/example/output_example1/

CHANGELOG.md

@@ -0,0 +1,21 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+## [0.0.2] - 2025-08-13
+
+### Added
+- Added `pyproject.toml` for PEP 517/518 build support.
+- Added `.gitignore` to exclude build artifacts, cache files, and system files from version control.
+
+### Changed
+- Increased minimum required Python version to **3.9**.
+- Updated `sigProfilerPlotting` to version **1.4.1**.
+- Updated `SigProfilerMatrixGenerator` to version **1.3.5**.
+- Updated `numpy` to version **2.0.0**.
+- Updated `pandas` to version **2.0.0**.
+- Updated `matplotlib` to version **3.4.3**.

HRProfiler/version.py

@@ -1,3 +1,6 @@
+
 # THIS FILE IS GENERATED FROM HRProfiler SETUP.PY
-short_version = '0.0.1'
-version = '0.0.1'
+short_version = '0.0.2'
+version = '0.0.2'
+  
+  

pyproject.toml

@@ -0,0 +1,3 @@
+[build-system]
+requires = ["setuptools>=61", "wheel", "build"]
+build-backend = "setuptools.build_meta"

setup.py

@@ -13,7 +13,7 @@ def readme():
     long_description = f.read()
     return(long_description)
 
-VERSION = '0.0.1'
+VERSION = '0.0.2'
 
 def write_version_py(filename='HRProfiler/version.py'):
   # Copied from numpy setup.py
@@ -40,14 +40,18 @@ def write_version_py(filename='HRProfiler/version.py'):
     author_email="[email protected]",
     license="UCSD",
     packages=["HRProfiler", "HRProfiler.scripts"],
-    python_requires=">=3.8",
+    python_requires=">=3.9",
     install_requires=[
-        "sigProfilerPlotting>=1.3.16",
-        "SigProfilerMatrixGenerator>=1.2.23",
+        "sigProfilerPlotting>=1.4.1",
+        "SigProfilerMatrixGenerator>=1.3.5",
         "joblib>=0.16.0",
         "scikit-plot==0.3.7",
         "scikit-learn>=1.1.3",
          "seaborn",
+         "numpy >= 2.0.0",
+         "pandas >= 2.0.0",
+         "matplotlib >= 3.4.3",
+
     ],
     include_package_data=True,
     zip_safe=False,